Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060387.seq
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 99 3e-21
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 99 3e-21
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 34 0.10
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 32 0.31
Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical p... 31 0.72
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 30 1.7
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 30 1.7
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 29 2.9
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 29 2.9
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 29 2.9
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 29 2.9
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 3.8
U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal m... 28 5.1
U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal m... 28 5.1
AF125447-2|AAD12808.1| 250|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical pr... 27 8.9
U58760-8|AAY55858.2| 216|Caenorhabditis elegans Hypothetical pr... 27 8.9
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 27 8.9
U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical pr... 27 8.9
U39646-6|AAK72058.1| 624|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 27 8.9
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 98.7 bits (235), Expect = 3e-21
Identities = 39/56 (69%), Positives = 49/56 (87%)
Frame = +1
Query: 241 ESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIP 408
+++ FKCHICHKKL++GPGLSIHCMQVHKE IDK+P ++ R NI +EIYGM+GIP
Sbjct: 31 KAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIPAAVHGRDNIHVEIYGMQGIP 86
Score = 81.0 bits (191), Expect = 7e-16
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = +2
Query: 152 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKH 253
MGRKKKK KPWCWYCNREFDDEKILIQHQKAKH
Sbjct: 1 MGRKKKKVDKPWCWYCNREFDDEKILIQHQKAKH 34
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 98.7 bits (235), Expect = 3e-21
Identities = 39/56 (69%), Positives = 49/56 (87%)
Frame = +1
Query: 241 ESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIP 408
+++ FKCHICHKKL++GPGLSIHCMQVHKE IDK+P ++ R NI +EIYGM+GIP
Sbjct: 31 KAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIPAAVHGRDNIHVEIYGMQGIP 86
Score = 81.0 bits (191), Expect = 7e-16
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = +2
Query: 152 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKH 253
MGRKKKK KPWCWYCNREFDDEKILIQHQKAKH
Sbjct: 1 MGRKKKKVDKPWCWYCNREFDDEKILIQHQKAKH 34
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 229 HPTSESEAFKCHICHKKLYTGPGLSIHCMQVHKEAID 339
+P + + ++KC C K+ T GLS H M H++ D
Sbjct: 263 NPATNTTSYKCTYCSKRYKTSSGLSNHMMSSHQKISD 299
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 471 ITVRPFAST*FLFLMFFHIFRGYTFHSINFYF 376
+ V FA FLFL+F +I Y+F + N+YF
Sbjct: 62 LAVLAFADIIFLFLLFPNILANYSFFTFNWYF 93
>Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical
protein R10E4.11 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 188 CWYCNREFDDEKILIQHQKAKHL 256
C YC R+F K +I+H+K KHL
Sbjct: 227 CRYCVRQFRTVKEVIEHEKEKHL 249
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSL 357
S+S F+C ICHK L H +VH++ K ++L
Sbjct: 263 SQSNRFECTICHKSYPVPSELRKHIKRVHEKDAPKSRSAL 302
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSL 357
S+S F+C ICHK L H +VH++ K ++L
Sbjct: 381 SQSNRFECTICHKSYPVPSELRKHIKRVHEKDAPKSRSAL 420
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 241 ESEAFKCHICHKKLYTGPGLSIH 309
E ++KCH+C + Y G GL+ H
Sbjct: 17 EQGSYKCHLCGQCFYRGCGLASH 39
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 241 ESEAFKCHICHKKLYTGPGLSIH 309
E ++KCH+C + Y G GL+ H
Sbjct: 17 EQGSYKCHLCGQCFYRGCGLASH 39
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 598 KCPGYIPGGTGPMGVGNIPGXTVEGPAPSN 509
KCP PG GP G PG + AP N
Sbjct: 133 KCPAGEPGPAGPDGPAGAPGADGQPGAPGN 162
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 598 KCPGYIPGGTGPMGVGNIPGXTVEGPAPSN 509
KCP PG GP G PG + AP N
Sbjct: 133 KCPAGEPGPAGPDGPAGAPGADGQPGAPGN 162
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +1
Query: 481 PAAKKKATPDCWVQALXQCXLGY-CPHPWGQCHQECI 588
P A + P C Q QC H QCHQ+C+
Sbjct: 121 PPAPAQCMPQCQQQCSQQCVQTQPVQHCQSQCHQQCV 157
>U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform a protein.
Length = 390
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 250 AFKCHICHKKLYTGPGLSIHCMQVHKEA--IDKVPNSLPNRSNIEIEIYGMEGI 405
+F C IC K LS H MQ H ++ N +P+ + +Y + I
Sbjct: 15 SFPCSICQKVFCHSSSLSRHRMQAHFKSYTCTTCNNEIPSNDTLRSHMYRVHNI 68
>U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform b protein.
Length = 392
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 250 AFKCHICHKKLYTGPGLSIHCMQVHKEA--IDKVPNSLPNRSNIEIEIYGMEGI 405
+F C IC K LS H MQ H ++ N +P+ + +Y + I
Sbjct: 15 SFPCSICQKVFCHSSSLSRHRMQAHFKSYTCTTCNNEIPSNDTLRSHMYRVHNI 68
>AF125447-2|AAD12808.1| 250|Caenorhabditis elegans Hypothetical
protein Y14H12B.1a protein.
Length = 250
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 217 RKDSHPTSESEAFKCHI--C-HKKLYTGPGLSIHCMQVHKEAIDKVPNS 354
R S P +++ FKC C H+ YT GL H HK ++P++
Sbjct: 14 RHQSTPFPKTKQFKCTWDGCDHRVFYTSRGLQWHTSVAHKLDNSEIPST 62
>Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical
protein T08G5.7 protein.
Length = 256
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 235 TSESEAFKCHICHKKLYTGPGLSIHCMQVH-KEAID 339
T S A+KC +C + T GL H Q H K+ ID
Sbjct: 71 TKGSGAWKCPVCELVIPTEKGLKNHMNQKHRKKPID 106
>U58760-8|AAY55858.2| 216|Caenorhabditis elegans Hypothetical
protein C27A2.7 protein.
Length = 216
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 241 ESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVP 348
+ +KC CH + GL H VH + + K P
Sbjct: 126 DQRVWKCVYCHTQFGRRGGLRRHVQMVHMQMMHKCP 161
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 601 AKCPGYIPGGTGPMGVGNIPGXTVEGPAPS 512
A PG G G G IPG T+E PAP+
Sbjct: 211 AGAPG-ANGNPGNAGTPGIPGKTIEVPAPA 239
>U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical
protein F53B3.1 protein.
Length = 543
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 149 KMGRKKKKASKPWCWYCNREFDDEKILIQHQKAKH 253
++ R KK P C +C++ F +E L +H KH
Sbjct: 316 QLKRPYKKKVSPQCPFCDKRFRNEFSLKKHFAKKH 350
>U39646-6|AAK72058.1| 624|Caenorhabditis elegans Hypothetical
protein F47B7.2c protein.
Length = 624
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 283 YTGPGLSIHCMQVHK-EAIDKVPNSL---PNRSNIEIEIYGMEGIP 408
+ P +H +V + EA DKV N L P R+ +I+ YG+ G+P
Sbjct: 577 HLNPKFQVHAGKVDQLEANDKVKNVLDASPQRTWKDIDGYGVLGVP 622
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 467 VMMMNQLPRKKLLQIAGCRPFXSVTWDIAHTHG 565
V + L + + + +A C P + WD HT+G
Sbjct: 97 VTWIGGLRKARCVNVAACAPANTFEWDDGHTNG 129
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 467 VMMMNQLPRKKLLQIAGCRPFXSVTWDIAHTHG 565
V + L + + + +A C P + WD HT+G
Sbjct: 164 VTWIGGLRKARCVNVAACAPANTFEWDDGHTNG 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,439,282
Number of Sequences: 27780
Number of extensions: 292889
Number of successful extensions: 1235
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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