Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060387.seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +1

Query: 247 EAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEI 381
           + +KC +CH+   +   + +H       ++   P   P    IEI
Sbjct: 258 KVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPIEPEIEI 302



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +2

Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTKSCTQDLDC 301
           C  C++ F     L+ H +       +V K+C +   C
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTC 215


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 238 SESEAFKCHICHKKLYTGPGLSIHCMQVHKE 330
           S  + F C +C K L +   L  H    H E
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAE 31



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 223 DSHPTSESEAFKCHICHKKLYTGPGLSIHCMQVHK 327
           D H   + E ++C IC +   +   L  H    HK
Sbjct: 27  DKHAERQEE-YRCVICERVYCSRNSLMTHIYTYHK 60


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 218 RRQTPCYNTSTKVWMPSSSSYP 153
           RR+TP YN+ +K+   S   +P
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,345
Number of Sequences: 438
Number of extensions: 3227
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)