Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060387.seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...    84   7e-17
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ...    39   0.003
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ...    28   4.8  
At1g71760.1 68414.m08294 hypothetical protein                          28   4.8  
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ...    28   6.3  
At5g28720.1 68418.m03528 hypothetical protein                          28   6.3  
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co...    28   6.3  
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    27   8.3  
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    27   8.3  

>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 34/63 (53%), Positives = 46/63 (73%)
 Frame = +1

Query: 241 ESEAFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDV 420
           +++ FKCH+CHKKL T  G+ IH +QVHKE + KVPN+   R + +IEIYGM+GIPP  +
Sbjct: 32  KAKHFKCHVCHKKLSTASGMVIHVLQVHKENVTKVPNAKDGRDSTDIEIYGMQGIPPHVL 91

Query: 421 KEH 429
             H
Sbjct: 92  TAH 94



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 27/35 (77%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
 Frame = +2

Query: 152 MGRKKKKAS-KPWCWYCNREFDDEKILIQHQKAKH 253
           MG+KKK+A+ K WC+YC+REFDDEKIL+QHQKAKH
Sbjct: 1   MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKH 35


>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 271

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +2

Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTKS-CTQDLDCPYTACRYI---KKP*TK 343
           C YC + F+DEK L +H   +H N+   T + C  DL C    C ++   KKP +K
Sbjct: 107 CGYCKKSFNDEKFLDKHFSTRHYNLLNTTDTKCLADL-CGALHCDFVLSSKKPKSK 161


>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 272

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 188 CWYCNREFDDEKILIQHQKAKHLNVTFVTK-SCTQDL 295
           C +C + F +EK L +H  ++H N+   +   C  DL
Sbjct: 109 CGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDL 145


>At1g71760.1 68414.m08294 hypothetical protein
          Length = 259

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 158 RKKKKASKPWCWYCNREFDDEKILIQHQKAKHL 256
           +KKK ++K  C  CN++   +K+  Q  KAK L
Sbjct: 21  QKKKSSNKWVCVICNQKQSVKKVFAQGYKAKEL 53


>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1862

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 576 VALAPWVWAISQVTLXKGLHPAIWSSF-FLGSWFIIIT 466
           V L  W W+  ++ + +G+H + WS + ++  W +++T
Sbjct: 620 VKLIMW-WSQPELYIGRGMHESAWSIYKYMMFWIVLLT 656


>At5g28720.1 68418.m03528 hypothetical protein 
          Length = 142

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 346 PNSLPNRSNIEIEIYGMEGIPPEDVKEH 429
           P++L  + ++E E Y  +G+P +D++EH
Sbjct: 87  PHTLGVQLDLEQEPYDDDGVPADDIEEH 114


>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
           contains Pfam domain, PF00096: Zinc finger, C2H2 type;
           identical to cDNA  putative histone deacetylase (HD2A)
           GI:11066134
          Length = 245

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 167 KKASKPWCWYCNREFDDEKILIQHQKAKH 253
           K AS+  C  C + F+    L  H KAKH
Sbjct: 213 KSASQVSCGSCKKTFNSGNALESHNKAKH 241


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 292 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 429
           PG+  + ++   EA+D VP +L   S ++  I  +  +  + +KE+
Sbjct: 361 PGVEQYAIRAFAEALDSVPMALAENSGLQ-PIETLSAVKSQQIKEN 405


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 292 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 429
           PG+  + ++   EA+D VP +L   S ++  I  +  +  + +KE+
Sbjct: 437 PGVEQYAIRAFAEALDSVPMALAENSGLQ-PIETLSAVKSQQIKEN 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,330
Number of Sequences: 28952
Number of extensions: 260761
Number of successful extensions: 873
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)