Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060386.seq
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.25 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.0  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -1

Query: 562 PVRRRYGPVLPNQSHRITASFQNFS-HFGIQQMLILRC*RQRTSFFFFCEDFVELVHL 392
           PV++R   V     H +       S   GI   L+ +C   R  ++F+C      VHL
Sbjct: 13  PVKKRKCTVSNVSLHSLKNKRSGASLQVGILDSLVFKCYNLRRIYYFYCVSITFNVHL 70


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 446 PSTPEDQHLLDA 481
           P +PED+ LLDA
Sbjct: 234 PKSPEDEELLDA 245


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 228 LTKVTAANGANFPSSRD*NKRRCGKWNLILDPKAC 332
           +T+  ++  A  P SRD     C K   + DP  C
Sbjct: 400 VTQKPSSTKAPAPPSRDLTTTLCTKAGYVRDPDDC 434


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 2   APATTTTVSKVFTAVGNRTLCNSN 73
           A  TTTT  KV     N T  N+N
Sbjct: 307 AGVTTTTKGKVRAKTQNATPANNN 330


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 318 DPKACPPMDCDAGKDGIPMRRALP 389
           DP  C   DC   +DG  +   LP
Sbjct: 164 DPAVCVLPDCFCSEDGTTIPGDLP 187


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 2   APATTTTVSKVFTAVGNRTLCNSN 73
           A  TTTT  KV     N T  N+N
Sbjct: 307 AGVTTTTKGKVRAKTQNATPANNN 330


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 382 ALRIGIPSLPASQSIGGHALGS 317
           AL+   P+L A  S+GG+A G+
Sbjct: 85  ALKKTNPALKALFSLGGYAAGT 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,663
Number of Sequences: 336
Number of extensions: 3450
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)