Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060386.seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   4.4  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   7.6  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   7.6  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   7.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.6  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -1

Query: 592  PPILCERILRPVRRRYGPVLPNQSHRITASFQNFSHFGIQQMLILRC*RQRTSFFFFCED 413
            PP+L E +   +    GP   +        F N S   +  ML+      +   +   +D
Sbjct: 984  PPVLAETLTNSLMEDVGPENVDMDIEDNEIFTNQSTMSVPSMLVENEESPKPDEYIDQKD 1043

Query: 412  FVELVHLRGKALRIGIPS 359
             V+   L GK+  +G+PS
Sbjct: 1044 KVQSPLLNGKS-PVGVPS 1060


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 205 KSKVQLRHKKFTPNDFWLCCFCSIKI 128
           K  +Q +HKK   NDF L  F  ++I
Sbjct: 103 KEPIQAKHKKNVENDFLLQRFRKVRI 128


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 380 SPHRDPILACVAIHRRT 330
           SPH +PILA  +  RRT
Sbjct: 334 SPHEEPILASTSADRRT 350


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 355 PASQSIGGHALGSNIRFHFPHLRLFQSREDG 263
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 323 QSVSSDGLRRRQGW-DPDAESL 385
           Q +  D +RR QGW  PD E+L
Sbjct: 354 QQIKEDEIRRAQGWFFPDKEAL 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,011
Number of Sequences: 5004
Number of extensions: 55572
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)