Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060386.seq
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    30   2.0  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    29   4.5  
12_02_0189 + 15165485-15168694                                         28   6.0  

>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
 Frame = -1

Query: 403  LVHL----RGKALRIGIPSLPASQSIGGHALGSN------IRFHFPHLR-LFQSREDGKL 257
            LVHL    RG + R GIP  P ++    HA+         IR H   L+ LFQ+ E   +
Sbjct: 1447 LVHLYAFVRGISFRFGIPHSPEAEKTLFHAMTHKEWDLLLIRVHLIALKWLFQNEE--LM 1504

Query: 256  APLA-----AVTFVSGTRTVIRKSKVQLRHKKFTPNDFWL--CCFCSIKITSTDH*LKNF 98
             PL+        F    RTV+  S  QL   +      +    C  S+ ++     +K  
Sbjct: 1505 EPLSFHLLNFCKFFCEDRTVMLSSSTQLVDIQLIAELVYSGETCISSLLVSLLSQMIKES 1564

Query: 97   IH*NELSLV-TITESAISYSCKN--FTDC 20
                 LS+V  ITE  +S+ C +  F  C
Sbjct: 1565 AEDEVLSVVNVITEILVSFPCTSDQFVSC 1593


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 218 SCTANKGHGGQWCQFPIFA*LKQAKMWEVESDIGSQS 328
           SC +   + G+W   P +A   +A  W    D+   S
Sbjct: 95  SCASTSSNSGRWAPSPAYAAFSEADSWSSSKDLRRNS 131


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 326 SVSSDGLRRRQGWDPD 373
           +V S GLRRR  WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,422,559
Number of Sequences: 37544
Number of extensions: 381230
Number of successful extensions: 1008
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)