Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060386.seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   3.5  
SB_31740| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   28   8.0  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               28   8.0  
SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14)                   28   8.0  

>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 544 HNAXEQAEEFVRKVWEAS---WNVCHFRHLPRWLQDNDY 651
           H A E+AE+  ++V EA    W       LP WL+DN++
Sbjct: 197 HEAGEKAEKIRKRVIEAGRSGWYTLSHIELPHWLRDNEF 235


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 303 WNLILDPKACPPMDCDAGKDGIP 371
           WN +L+P    P DCD   +G+P
Sbjct: 749 WNDVLNPLLAEPPDCDPTYEGLP 771


>SB_31740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 553 RRYGPVLPNQSHRITASFQNFSHFGIQ 473
           R Y  V P++ HR +A + N S FG +
Sbjct: 139 REYSAVRPHRQHRCSADYYNTSCFGFE 165


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 454 TGGSTSVGCRNG*SFESWLLSDEIDLGALAHNAXEQAEEFVRKVWEASWNV 606
           T  + S+G   G  F+ W+  + I    L +    QA +F  KVW +  N+
Sbjct: 178 TEATHSMGGAIGYRFKKWIQRENIRPTPLKYRDVWQAAQFESKVWNSKENL 228


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 412  FVELVHLRGKALRIGIPSLPASQSIGGHALGS 317
            FV  VHL   AL  GIP   +S  +G  ++GS
Sbjct: 1044 FVPFVHLPAYALECGIPISKSSTLVGMMSIGS 1075


>SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14)
          Length = 1248

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 589 PILCERI-LRPVRRRYGPVLPNQSHRITASFQNFSHFGI 476
           P++ ER+ +  VRR +GP+LP +  R   S    +++ +
Sbjct: 44  PLVPERVWMEEVRREFGPLLPGRQQRGPESLDPETYYSL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,174,907
Number of Sequences: 59808
Number of extensions: 421323
Number of successful extensions: 1165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)