Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060386.seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    41   7e-04
AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical ...    41   7e-04
Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 517 DEIDLGALAHNAXEQAEEFVRKVWEASWNVCHFRHLPRWLQDNDY 651
           DE +L         +    V K +EA W V  + HLP WLQDN++
Sbjct: 131 DEDELEVDVKEDRSEQTGIVTKTYEARWKVLKYEHLPEWLQDNEF 175


>AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical
           protein Y32H12A.5 protein.
          Length = 581

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 574 VRKVWEASWNVCHFRHLPRWLQDNDY 651
           +++ WEA W   +F  LP WLQDN+Y
Sbjct: 260 IKRFWEARWKATNFETLPEWLQDNEY 285


>Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical
           protein F08G5.4 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 222 VPLTKVTAANGANFPSSRD*NKRRCGKWNLILDPKACPP 338
           +P+T+ +  N +N  +     KR+ G+ N    P  CPP
Sbjct: 58  IPVTRPSLDNQSNLRAIFGREKRQAGQCNCGAQPNNCPP 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,740
Number of Sequences: 27780
Number of extensions: 322991
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)