Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060386.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14500.1 68415.m01623 F-box family protein contains F-box dom...    30   1.6  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At1g34170.1 68414.m04238 transcriptional factor B3 family protei...    29   3.7  
At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ...    28   4.9  
At1g59124.1 68414.m06672 disease resistance protein (CC-NBS-LRR ...    28   4.9  
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ...    28   4.9  
At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR ...    28   4.9  
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ...    27   8.6  

>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 369 GSHPCLRRNPSEDTLWDPISDSTSHIFACFNHAKMGNW 256
           G H C+  NP ED ++  + D +  IF     A  GNW
Sbjct: 58  GVHGCVLYNPDEDRIYKSVRDFSGTIFL----ANSGNW 91


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 321 DPISDSTSHIFACFNHAKMGNWHH 250
           DP + ST+H+  C  HA  GNW +
Sbjct: 672 DPFN-STAHVLLCSMHASSGNWEN 694


>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain;
           contains non-consensus GA donor splice site at intron 12
          Length = 623

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 248 QWCQFPIFA*LKQAKMWEVESDIGSQSVSSDGLRRRQGW 364
           QW +   F    Q   W++E  I S  +S   L++++ W
Sbjct: 335 QWDELSPFLRPNQVSPWDIEHLIPSSDISQSSLKKKKHW 373


>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 562 PVRRRYGPVLPNQSHRITASFQNFSHFGIQQMLI 461
           P RRRY   +   S+RI+   ++   FG+QQ ++
Sbjct: 103 PDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIV 136


>At1g59124.1 68414.m06672 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative domain
           signature CC-NBS-LRR exists, suggestive of a disease
           resistance protein; identical to cDNA RXF10 mRNA for
           PRM1 homolog, partial cds GI:6520172; contains Pfam
           profiles  PF00931:  NB-ARC domain and  PF00560:  Leucine
           Rich Repeat
          Length = 855

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 562 PVRRRYGPVLPNQSHRITASFQNFSHFGIQQMLI 461
           P RRRY   +   S+RI+   ++   FG+QQ ++
Sbjct: 103 PDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIV 136


>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631;
          Length = 941

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 562 PVRRRYGPVLPNQSHRITASFQNFSHFGIQQMLI 461
           P RRRY   +   S+RI+   ++   FG+QQ ++
Sbjct: 95  PDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIV 128


>At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631; identical to cDNA RF45 mRNA for
           PRM1 homolog, partial cds GI:6520196
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 562 PVRRRYGPVLPNQSHRITASFQNFSHFGIQQMLI 461
           P RRRY   +   S+RI+   ++   FG+QQ ++
Sbjct: 103 PDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIV 136


>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
           class), putative similar to diesease resistance protein
           rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
          Length = 1138

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 562 PVRRRYGPVLPNQSHRITASFQNFSHFGIQQMLI 461
           P RR     + + S RIT   ++   FG+QQM++
Sbjct: 103 PDRREIALYIGHVSKRITRVIRDMQSFGVQQMIV 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,659,021
Number of Sequences: 28952
Number of extensions: 295705
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)