Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060385.seq
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   146   2e-37
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   146   2e-37
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  146 bits (354), Expect = 2e-37
 Identities = 67/94 (71%), Positives = 76/94 (80%)
 Frame = +3

Query: 255 LAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTVRG 434
           LAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDT RG
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARG 202

Query: 435 MLPDPKNTPIVIXLGHRSDRNHSRRIISYPFDTV 536
           MLPDPK TP +I  G          I+SYPFDTV
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTV 236



 Score =  144 bits (350), Expect = 5e-37
 Identities = 67/85 (78%), Positives = 68/85 (80%)
 Frame = +1

Query: 1   DAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXX 180
           D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF  
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVG 117

Query: 181 XXXXXXXXXXTSLCFVYPLDFARTR 255
                     TSLCFVYPLDFARTR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTR 142



 Score = 65.3 bits (152), Expect = 5e-13
 Identities = 36/73 (49%), Positives = 40/73 (54%)
 Frame = +1

Query: 442 PTLRTHPL*SXWAIAQTVTTVAVSSPIPSTQSXXXXXXQSGRAKSDILYKNTXHCWATIA 621
           P  +  P    W IAQ VTTVA     P          QSGRAKS+ILYK+T HCWATI 
Sbjct: 205 PDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264

Query: 622 KTRGEPRPXFKGS 660
           KT G     FKG+
Sbjct: 265 KTEG-GNAFFKGA 276



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 285 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 422
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  146 bits (354), Expect = 2e-37
 Identities = 67/94 (71%), Positives = 76/94 (80%)
 Frame = +3

Query: 255 LAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTVRG 434
           LAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDT RG
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARG 202

Query: 435 MLPDPKNTPIVIXLGHRSDRNHSRRIISYPFDTV 536
           MLPDPK TP +I  G          I+SYPFDTV
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTV 236



 Score =  144 bits (350), Expect = 5e-37
 Identities = 67/85 (78%), Positives = 68/85 (80%)
 Frame = +1

Query: 1   DAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXX 180
           D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF  
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVG 117

Query: 181 XXXXXXXXXXTSLCFVYPLDFARTR 255
                     TSLCFVYPLDFARTR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTR 142



 Score = 65.3 bits (152), Expect = 5e-13
 Identities = 36/73 (49%), Positives = 40/73 (54%)
 Frame = +1

Query: 442 PTLRTHPL*SXWAIAQTVTTVAVSSPIPSTQSXXXXXXQSGRAKSDILYKNTXHCWATIA 621
           P  +  P    W IAQ VTTVA     P          QSGRAKS+ILYK+T HCWATI 
Sbjct: 205 PDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264

Query: 622 KTRGEPRPXFKGS 660
           KT G     FKG+
Sbjct: 265 KTEG-GNAFFKGA 276



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 285 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 422
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 235 LDFARTRSPPMSVREMASVNSPVSETASAR 324
           LD   T SPP+++    +   PV++    R
Sbjct: 50  LDCTATGSPPLNIDWSTADGHPVNDVPGVR 79


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 235 LDFARTRSPPMSVREMASVNSPVSETASAR 324
           LD   T SPP+++    +   PV++    R
Sbjct: 50  LDCTATGSPPLNIDWSTADGHPVNDVPGVR 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,817
Number of Sequences: 438
Number of extensions: 3826
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)