Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060384.seq
         (345 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb...    66   1e-10
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu...    32   2.3  

>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
           mori Macula-like latent virus|Rep: RNA-dependent RNA
           polymerase - Bombyx mori Macula-like latent virus
          Length = 1747

 Score = 66.5 bits (155), Expect = 1e-10
 Identities = 33/37 (89%), Positives = 33/37 (89%)
 Frame = +2

Query: 113 MAFTNLVDTLANTIHRDAITAXLXVTAISNFRH*LQL 223
           MAFTNLVDTLANTIHRDAITA L  TAISNFRH LQL
Sbjct: 1   MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQL 37



 Score = 39.5 bits (88), Expect = 0.015
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 5  ISXFRHKLQXYPYQVNSKL 61
          IS FRHKLQ YPYQVNSKL
Sbjct: 28 ISNFRHKLQLYPYQVNSKL 46


>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
           latent virus|Rep: RNA replicase polyprotein - Erysimum
           latent virus (ELV)
          Length = 1748

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 113 MAFTNLVDTLANTIHRDAITAXLXVTAISNFRH*LQL 223
           MAF   +D L++T HRD+I+A L  +++S  +  L+L
Sbjct: 1   MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLEL 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,115,168
Number of Sequences: 1657284
Number of extensions: 1827280
Number of successful extensions: 1638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)