Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060384.seq
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     27   3.9  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    26   9.1  

>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 253 HEPWNLPDMXKL 218
           HEPW LPD+ KL
Sbjct: 60  HEPWELPDVAKL 71


>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 131  VDTLANTIHRDAITAXLXVTAISNFRH 211
            + TL NT   D I+    V+A+SN RH
Sbjct: 1121 LQTLRNTYPFDTISLPRNVSALSNLRH 1147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,313,874
Number of Sequences: 37544
Number of extensions: 52541
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)