BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060382.seq (557 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 60 3e-10 SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 5.7 SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 10.0 >SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 537 Score = 59.7 bits (138), Expect = 3e-10 Identities = 30/63 (47%), Positives = 35/63 (55%) Frame = +2 Query: 254 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 433 PR+NN F + E G G G TVYPPLSS +H G ++DLAI SL L G Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161 Query: 434 ISS 442 ISS Sbjct: 162 ISS 164 Score = 42.3 bits (95), Expect = 5e-05 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +3 Query: 9 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 182 +DI LY EL PGS L G+ Q+YN ++AH Sbjct: 18 KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77 Query: 183 XXXXXXXXXN*LVPLILGAPDIAF 254 N LVPL++GAPD+A+ Sbjct: 78 IPALFGAFGNYLVPLMIGAPDVAY 101 >SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 762 Score = 25.4 bits (53), Expect = 5.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 280 TPTPLPYIINFKKNCRKWCRNRMNS 354 T T YIINFKKN + R +++S Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536 >SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 782 Score = 24.6 bits (51), Expect = 10.0 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 102 DFLIQLELKVLKMFQL 55 DFLIQL+ KV FQL Sbjct: 609 DFLIQLKSKVFNRFQL 624 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,734,175 Number of Sequences: 5004 Number of extensions: 27119 Number of successful extensions: 52 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 51 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 233995432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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