Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060381.seq
         (564 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   3.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   3.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   3.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.2  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   5.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   9.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 114  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 236
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 PPAASTCPRHPRRLGARHHGLCP 303
           P  A   P+HP    A  HGL P
Sbjct: 46  PQVAPQYPQHPYAAPAPGHGLQP 68



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVA 111


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 413 DSVLDVVRKEAESCDCLQGF 472
           D V    RK AE C  LQGF
Sbjct: 233 DVVASNSRKTAEMCYKLQGF 252


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 536 DFEMRRVXLRNRCXXR 489
           DF+ R V LRNR   R
Sbjct: 6   DFDTRTVRLRNRVGKR 21


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 471 NPWRQSHDSASFRTTSKTESTSSA 400
           +P  Q+H SAS +    T ST  A
Sbjct: 44  SPNTQTHPSASCKYADSTSSTGVA 67


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 202 CKSESPW*APVGSMPC 155
           C +E PW    G  PC
Sbjct: 351 CVNERPWSLYCGEPPC 366


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 265 PRRLGARHHG 294
           P+RL  RHHG
Sbjct: 21  PQRLRIRHHG 30


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  IYSSHK*NKMREIVHIQAGQCGNQIGAKFWEI 143
           I +  + N+++  V I    C N   A+F+E+
Sbjct: 283 IEAKRRDNEIKMFVKIVDASCRNFTAARFFEL 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,576
Number of Sequences: 336
Number of extensions: 2467
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)