Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060381.seq
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 159 1e-39
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 159 1e-39
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 159 1e-39
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 159 2e-39
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 157 4e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 157 5e-39
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 156 1e-38
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 156 1e-38
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 155 2e-38
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 87 1e-17
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 87 1e-17
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 86 2e-17
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 86 2e-17
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 86 2e-17
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 86 2e-17
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 84 7e-17
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 66 2e-11
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 66 2e-11
At4g37190.1 68417.m05265 expressed protein 31 0.70
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 31 0.70
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 30 0.93
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 2.8
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 6.5
At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 27 8.7
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 8.7
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 27 8.7
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 27 8.7
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 159 bits (386), Expect = 1e-39
Identities = 69/76 (90%), Positives = 75/76 (98%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 62 RAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 122 KEAENCDCLQGFQVCH 137
Score = 108 bits (259), Expect = 3e-24
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 159 bits (386), Expect = 1e-39
Identities = 69/76 (90%), Positives = 75/76 (98%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 62 RAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 122 KEAENCDCLQGFQVCH 137
Score = 111 bits (266), Expect = 4e-25
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 159 bits (386), Expect = 1e-39
Identities = 69/76 (90%), Positives = 75/76 (98%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 62 RAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 122 KEAENCDCLQGFQVCH 137
Score = 108 bits (260), Expect = 2e-24
Identities = 46/60 (76%), Positives = 54/60 (90%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 159 bits (385), Expect = 2e-39
Identities = 68/76 (89%), Positives = 75/76 (98%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVR
Sbjct: 63 RAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 122
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 123 KEAENCDCLQGFQVCH 138
Score = 113 bits (271), Expect = 1e-25
Identities = 50/61 (81%), Positives = 55/61 (90%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 251
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 252 V 254
V
Sbjct: 61 V 61
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 157 bits (382), Expect = 4e-39
Identities = 67/76 (88%), Positives = 75/76 (98%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVR
Sbjct: 63 RAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 122
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 123 KEAENCDCLQGFQVCH 138
Score = 117 bits (282), Expect = 5e-27
Identities = 50/61 (81%), Positives = 57/61 (93%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 251
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 252 V 254
V
Sbjct: 61 V 61
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 157 bits (381), Expect = 5e-39
Identities = 68/76 (89%), Positives = 75/76 (98%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVR
Sbjct: 62 RAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 122 KEAENCDCLQGFQVCH 137
Score = 114 bits (275), Expect = 3e-26
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 156 bits (378), Expect = 1e-38
Identities = 67/76 (88%), Positives = 74/76 (97%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 62 RAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 122 KEAENCDCLQGFQVCH 137
Score = 113 bits (273), Expect = 6e-26
Identities = 49/60 (81%), Positives = 54/60 (90%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 156 bits (378), Expect = 1e-38
Identities = 67/76 (88%), Positives = 74/76 (97%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 62 RAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+CDCLQGFQ+ H
Sbjct: 122 KEAENCDCLQGFQVCH 137
Score = 113 bits (273), Expect = 6e-26
Identities = 49/60 (81%), Positives = 54/60 (90%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 155 bits (376), Expect = 2e-38
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 62 RAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Query: 437 KEAESCDCLQGFQLTH 484
KEAE+ DCLQGFQ+ H
Sbjct: 122 KEAENSDCLQGFQVCH 137
Score = 113 bits (272), Expect = 8e-26
Identities = 50/60 (83%), Positives = 54/60 (90%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/72 (52%), Positives = 51/72 (70%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VR
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 248
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/72 (52%), Positives = 51/72 (70%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VR
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 248
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +R
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 248
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +R
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 248
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +R
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 248
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +R
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 248
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.8 bits (198), Expect = 7e-17
Identities = 35/72 (48%), Positives = 52/72 (72%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 436
RA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+ +R
Sbjct: 64 RAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLR 123
Query: 437 KEAESCDCLQGF 472
K A++C LQGF
Sbjct: 124 KLADNCTGLQGF 135
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 248
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 249 YV 254
+V
Sbjct: 61 HV 62
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 430
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 431 VRKEAESCDCLQGFQLTH 484
+ +EA+ D L+GF L H
Sbjct: 122 IDREADGSDSLEGFVLCH 139
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 78 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYI 61
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 65.7 bits (153), Expect = 2e-11
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 430
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 431 VRKEAESCDCLQGFQLTH 484
+ +EA+ D L+GF L H
Sbjct: 122 IDREADGSDSLEGFVLCH 139
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 78 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 254
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYI 61
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 75 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 164
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.7 bits (66), Expect = 0.70
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 407 LVDSVLDVVRKEAESCDCLQGF 472
+++SV VVRKEAE+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 30.3 bits (65), Expect = 0.93
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = -2
Query: 245 AAGGFIVVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 66
AAGGF + I + + ++ VP + G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
Query: 65 FM*TINYLTLKIXP 24
+ TL I P
Sbjct: 195 INGRGSGATLNIEP 208
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 482 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 369
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 81 EIVHIQAGQCGNQIGAKFWEIISD 152
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At2g38800.1 68415.m04764 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 612
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 352 SEDEVVRTEDLSERSRADRVHGAGLQVDED 263
SE+E V+ +DL E+ + +G +VD D
Sbjct: 221 SEEEFVKMDDLEEKKEFENGNGGSCEVDID 250
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 96 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 188
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 379 GPVVTGAGLSEDEVVRTEDLSERSRADRVH 290
GP TG G +LSER R DR++
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 379 GPVVTGAGLSEDEVVRTEDLSERSRADRVH 290
GP TG G +LSER R DR++
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,553,334
Number of Sequences: 28952
Number of extensions: 228462
Number of successful extensions: 698
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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