Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ci...    89   9e-17
UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;...    89   9e-17
UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein ...    71   2e-11
UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-bindi...    66   5e-10
UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whol...    46   6e-04
UniRef50_A6RJP4 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q7S9F2 Cluster: Putative uncharacterized protein NCU063...    33   3.6  
UniRef50_UPI0000E4614C Cluster: PREDICTED: similar to smad nucle...    33   6.2  
UniRef50_UPI0000F1F456 Cluster: PREDICTED: hypothetical protein;...    32   8.2  
UniRef50_A6NUK3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  
UniRef50_Q5DW99 Cluster: Plastid DNA-binding protein; n=1; Brass...    32   8.2  

>UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ciona
           intestinalis|Rep: Core-binding factor, b subunit - Ciona
           intestinalis (Transparent sea squirt)
          Length = 181

 Score = 88.6 bits (210), Expect = 9e-17
 Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 8/94 (8%)
 Frame = +3

Query: 252 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 431
           +A ++S++LF+RLSR++E++YTGYRDR  EERQ+RF + CR G  EIAF G+GTN  L F
Sbjct: 13  RATYDSNELFRRLSRDTEIKYTGYRDRGTEERQLRFQNSCRAGRAEIAFVGSGTNFTLQF 72

Query: 432 -DHSPYNNRG-------CDFQKENGKAHIVSRFI 509
              S    +G        +F +E GK H+ + FI
Sbjct: 73  YPWSVEGGQGITPPKDYVNFDREPGKVHLKAPFI 106



 Score = 42.7 bits (96), Expect = 0.006
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 494 RIPIHMNGVCVRWRGWIDLERLDGAG 571
           + P  +NGVCV W+GW+DL RL+G G
Sbjct: 102 KAPFILNGVCVCWKGWMDLHRLEGMG 127


>UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;
           Eumetazoa|Rep: Core-binding factor subunit beta - Homo
           sapiens (Human)
          Length = 182

 Score = 88.6 bits (210), Expect = 9e-17
 Identities = 36/60 (60%), Positives = 49/60 (81%)
 Frame = +3

Query: 252 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 431
           ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  TGTNL L F
Sbjct: 9   RSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQF 68



 Score = 46.8 bits (106), Expect = 4e-04
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 494 RIPIHMNGVCVRWRGWIDLERLDGAG 571
           + P+ +NGVCV W+GWIDL+RLDG G
Sbjct: 98  KAPMILNGVCVIWKGWIDLQRLDGMG 123


>UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein
           LOC468115, partial; n=1; Pan troglodytes|Rep: PREDICTED:
           hypothetical protein LOC468115, partial - Pan
           troglodytes
          Length = 197

 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 27/47 (57%), Positives = 40/47 (85%)
 Frame = +3

Query: 252 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEI 392
           ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EI
Sbjct: 80  RSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEI 126



 Score = 33.1 bits (72), Expect = 4.7
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +3

Query: 252 KAKFESDDLFKRLSRESEVRYTGYR 326
           ++KFE+++ F++LSRE EVR  G R
Sbjct: 9   RSKFENEEFFRKLSRECEVRQAGGR 33


>UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-binding
           factor, beta subunit, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to core-binding factor,
           beta subunit, partial - Ornithorhynchus anatinus
          Length = 117

 Score = 66.1 bits (154), Expect = 5e-10
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +3

Query: 306 VRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 431
           ++YTG+RDRP EERQ RF + CR+G +EIAF  TGTNL L F
Sbjct: 1   IKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQF 42


>UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whole
           genome shotgun sequence; n=6; Euteleostomi|Rep:
           Chromosome undetermined SCAF19216, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 76

 Score = 46.0 bits (104), Expect = 6e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 494 RIPIHMNGVCVRWRGWIDLERLDGAG 571
           + P+ +NGVCV W+GWIDL RLDG G
Sbjct: 5   KAPMILNGVCVIWKGWIDLHRLDGMG 30


>UniRef50_A6RJP4 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 927

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 133 VVMHAMSDPSPLAGMLP-FDSIYEQPKPRFIFKMPRVVPDQKPNSNQTISSK 285
           VV  A+S  + LAGML  F+SI++ P  R + +  +   +QKP+  +   +K
Sbjct: 285 VVSEAVSSSTNLAGMLASFESIHQGPVRRIVDRKSKPAKEQKPSREKAAPAK 336


>UniRef50_Q7S9F2 Cluster: Putative uncharacterized protein
           NCU06395.1; n=2; Sordariomycetes|Rep: Putative
           uncharacterized protein NCU06395.1 - Neurospora crassa
          Length = 222

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 26/101 (25%), Positives = 41/101 (40%)
 Frame = -3

Query: 422 LKVCAGTGKRYLRVSLAATAHEPHLAFFGRPVSVSSVSNLTFSAKSXXXXXXXXXXX*SG 243
           +K   G  +R    S+ AT  +   A    PV   S+S    S  S            +G
Sbjct: 58  IKTILGDAQRKEASSILATPQDASGAATPAPVGDDSLST---SGTSTPVVPSANGANANG 114

Query: 242 TTRGILKMNLGFGCS*IESKGNMPANGEGSLIACITTAPIA 120
           TT  + + +       +E   N+PA G   L A +++AP+A
Sbjct: 115 TTANLAQASRSLSKLVLEKSLNVPAKGSNGLAASLSSAPVA 155


>UniRef50_UPI0000E4614C Cluster: PREDICTED: similar to smad nuclear
           interacting protein; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to smad nuclear
           interacting protein - Strongylocentrotus purpuratus
          Length = 923

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
 Frame = +3

Query: 171 GHVAF*LYLRAAKAKV-HFQNATCS-ARSKAKFESDDLFKRLSRESEVRYTGYRDRPPEE 344
           G +AF L     K+K   FQ +  + ++ + K +S D+ KRL ++SE       + PP  
Sbjct: 178 GTIAFALPKTLPKSKHGSFQGSEAAQSKQEEKDKSSDVSKRLDKKSEENEKAAANAPPLP 237

Query: 345 RQMRFMSG--CREGHTEIAFTGTGTNLQLVFDHSPYNNRG----CDFQKEN 479
            +    SG   +E H E+   G+  + ++  +  PY+  G    CDFQ ++
Sbjct: 238 YKEPSWSGVPSQEYHLEVLKNGSILS-KVALNDKPYHVFGRLASCDFQMDH 287


>UniRef50_UPI0000F1F456 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 655

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 11/34 (32%), Positives = 25/34 (73%)
 Frame = +1

Query: 187 DSIYEQPKPRFIFKMPRVVPDQKPNSNQTISSKD 288
           D + + P+PR   ++P +VP+++P S +++S+K+
Sbjct: 357 DIVSKPPRPRSRSRIPILVPEEEPGSEKSLSTKE 390


>UniRef50_A6NUK3 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 243

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 366 GC-REGHTEIAF-TGTGTNLQLVFDHSPYNNRGCDFQKENGKAH 491
           GC  + HT+ AF T     L+   D  PYN+  CD  +EN KAH
Sbjct: 136 GCVADIHTQAAFKTYWAKRLEEDPDIDPYNDLFCDLLEENAKAH 179


>UniRef50_Q5DW99 Cluster: Plastid DNA-binding protein; n=1; Brassica
           napus|Rep: Plastid DNA-binding protein - Brassica napus
           (Rape)
          Length = 476

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 148 MSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKPNSNQTISSKDL 291
           + DP P   ++P DSI  Q K   I K  R++ D++ N    +S + +
Sbjct: 130 LMDPVPPLSLVPEDSILHQVKVIIILKKQRILQDREVNGYHQLSEEGI 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,832,383
Number of Sequences: 1657284
Number of extensions: 10684177
Number of successful extensions: 31046
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31039
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)