Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    29   0.63 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   1.5  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   3.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.8  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 314 HWIPRPASRRTPDAVHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPRLRLSKGK 478
           H IP P  R++  A  ++    +  +  Y  RH+ S    S T  +  LR SKGK
Sbjct: 123 HEIPIPKKRKSKPAPKQKKSVASDDEDAYDKRHRFSINSASGTEIRTSLRSSKGK 177


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 264 ESDDLFKRLSRESEVRYTGYRDRPPEE 344
           + DD+FKRL ++ + R   YR R   E
Sbjct: 390 QEDDIFKRLKQQEDRRNENYRRRQQRE 416


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 217 FIFKMPRVVPDQKPNSNQTISSKDLAEKVRLDTLDTETGL 336
           F+F    +  DQK +    +S     + +R+DT D +T L
Sbjct: 361 FVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL 400


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +1

Query: 109 RASKAIGAVVMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKPNSNQTISSKD 288
           RA K + +   + M DP     M   D+  EQP   +I KM        PN  +   S +
Sbjct: 361 RARKVLSSTPHYEMIDPDITLAMESCDASKEQPVLVYISKMVAFSERDLPNHRRKQLSAE 420

Query: 289 LAEKVR 306
             + +R
Sbjct: 421 EMKLIR 426


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 381 HTEIAFTGTGTNLQLVFDHSPY 446
           +T + FTGTGT        SPY
Sbjct: 489 NTTVTFTGTGTGSATATSSSPY 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,010
Number of Sequences: 5004
Number of extensions: 42399
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)