Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440...    29   2.0  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    28   4.6  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    28   6.0  

>01_01_0591 -
           4401847-4402063,4402860-4403002,4403339-4403447,
           4403546-4404707,4405754-4405865,4405980-4406015
          Length = 592

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 386 GDSVYRYRHKPSACLRSLTLQQPRLRLSKGKWKSSHRIP 502
           G + YR R + S  LR+  +    L+L  G W ++ ++P
Sbjct: 55  GGAPYRLRRRNSETLRAQYINTKELKLCVGTWNAAGKVP 93


>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = +2

Query: 347 PDAVHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPR-LRLSKG--KWKSSH-RIPIHMN 514
           P AV + LP     DSVY   +  +  L     Q+PR ++ + G  K+K+S+ R+ +H+ 
Sbjct: 578 PGAVQQTLPITL--DSVYF--NGGNLMLLGYGDQEPREMKHANGHIKFKNSYNRVHVHVT 633

Query: 515 GVCVRWR 535
           G C+ WR
Sbjct: 634 GNCMEWR 640


>02_05_0235 -
           27068516-27069032,27069697-27069788,27070056-27070289,
           27071569-27071676,27071796-27071855,27072368-27072443,
           27072550-27072710,27076919-27076981,27077061-27077148,
           27077568-27078308,27078406-27079033,27079314-27079368,
           27082073-27083527
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 446 QQPRLRLSKGKWKSSHRIPIHMNGVC 523
           + P  RL +GK K +HR+P+    +C
Sbjct: 882 ESPTRRLDEGKRKQTHRLPLPPLSIC 907


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,494
Number of Sequences: 37544
Number of extensions: 317658
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)