Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)                    90   1e-18
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                30   1.2  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.2  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   2.7  
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)                   29   2.7  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    29   3.5  
SB_17445| Best HMM Match : YDG_SRA (HMM E-Value=1.3)                   29   3.5  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   28   6.2  
SB_55629| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_5155| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
          Length = 174

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
 Frame = +3

Query: 252 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 431
           K KFE+D++F++L+RESE++YTGYRDR  EER +RF +  R+G + +A+  +GTNL L F
Sbjct: 9   KQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVASGTNLTLHF 68

Query: 432 DHSP---YNNRGCDFQKENGKAHIVSRFI 509
             +      +   DF +E GK HI S FI
Sbjct: 69  PKAEDGFIRSEFLDFDREPGKVHIKSHFI 97



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +2

Query: 509 MNGVCVRWRGWIDLERLDGAG 571
           +NGVC+ ++GWIDL+RLDG G
Sbjct: 98  LNGVCIIFKGWIDLQRLDGIG 118


>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +2

Query: 509 MNGVCVRWRGWIDLERLDGAG 571
           +NGVC+ ++GWIDL+RLDG G
Sbjct: 9   LNGVCIIFKGWIDLQRLDGIG 29


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 226 KMPRVVPDQKPNSNQTISSKDLAEKVRLDTLDTETGLPKNA 348
           +MP  +P Q  NSN   S   ++    +DT+ + +G+P ++
Sbjct: 145 QMPVAIPVQHSNSNDDNSGYSVSRSSSVDTIGSNSGMPNSS 185


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 314 HWIPRPASRRTPDAVHERLPRGTHGDSVYRYRHKPSACLRSLT 442
           H +       TP +  ++  RG  GDSV   RH P   LR+L+
Sbjct: 847 HAVDEDGKPSTPPSRSKKRTRGISGDSVSDNRHTPRRSLRNLS 889


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 403 VPAQTFSLSSITHPTTTAAATFKRKMEKLTSYPDSYERCLCKME 534
           VPA T  +S I   T T   T +++ E   S   SY+  L +ME
Sbjct: 485 VPADTEDMSGILQDTQTPLHTQQQRSEFTRSSRSSYKNALAQME 528


>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
          Length = 882

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 403 VPAQTFSLSSITHPTTTAAATFKRKMEKLTSYPDSYERCLCKME 534
           VPA T  +S I   T T   T +++ E   S   SY+  L +ME
Sbjct: 213 VPADTEDMSGILQDTQTPLHTQQQRSEFTRSSRSSYKNALAQME 256


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 252 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 407
           KAK E  D+F +++ E E++  G+R+ P ++  + +   GC+    ++  T +
Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482


>SB_17445| Best HMM Match : YDG_SRA (HMM E-Value=1.3)
          Length = 284

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 190 SIYEQPKPRFIFKMPRVVPDQKPNSNQTISSKDLAEKV 303
           +I ++  P F F  P+++P  KP S +  S+KD+ +KV
Sbjct: 54  NINQEHVPNFAFVRPQILPVLKPKSWER-STKDMIKKV 90


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 412  QTFSLSSITHPTTTAAATFKRKMEKLTSYPDSYERCLC 525
            +T    S  HP  + A   +R  E+    PD+YER +C
Sbjct: 1147 ETLVTISDQHPVESVAEFLERTREEHKENPDAYERNVC 1184


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 223 FKMPRVVPDQKPNSNQTISSKDLAEKVRLDTLDTETGLPKNAR 351
           FK   + PD +P  +     +DL +  ++DT+  + G P  A+
Sbjct: 210 FKSTGLYPDTEPVDDAPFEGEDLVQHEQIDTMLAKLGAPCTAQ 252


>SB_55629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 136 VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKPNSNQTISSKDLAEKVRLDT 315
           V   M   S  +  LP +S      PRF+  +  +VP  +   +   + KDL +K + DT
Sbjct: 215 VEKTMVSQSRTSDGLPVNSGNGTKDPRFVQLVRELVPTLEYGQSLKYTEKDLLDKKKNDT 274

Query: 316 LD 321
            D
Sbjct: 275 RD 276


>SB_5155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 FKMPRVVPDQKPNSNQTISSKDLAEKVRLDTLDTETGLPKNAR 351
           FK   + PD +P  +     +DL +  ++DT+    G P  A+
Sbjct: 79  FKSTGLYPDTEPVDDDPFEGEDLVQHEQIDTMLATLGAPCTAQ 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,048
Number of Sequences: 59808
Number of extensions: 355096
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)