Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    30   1.0  
Z78413-3|CAB01659.1|  202|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    28   5.4  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    28   5.4  
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81054-6|CAE17756.1|  412|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 245 GTTRGILKMNLGFGCS*IESKGNMPAN-GEGSLIACITTA 129
           GTTRG +K+N+ FG   + +  +   N G+ +   C T A
Sbjct: 343 GTTRGSIKLNVAFGARIMSTSQDKEVNEGDNAFFHCATLA 382


>Z78413-3|CAB01659.1|  202|Caenorhabditis elegans Hypothetical
           protein T01C3.3 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 415 TFSLSSITHPTTTAAATFKRKMEKLTSYPDSYERCLCKMERLDRS 549
           TF L+ ITH +    A  K+K+    +   +Y  CL   ++ D +
Sbjct: 99  TFKLNRITHESVKEQAVLKKKLLDCETRLATYSECLVCYQKFDEN 143


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
 Frame = +3

Query: 192 YLRAAKAKVHFQNATCSARSKAKFES--------DDLFKRLSRESEVRYTG 320
           Y++  K ++ F +A C+ R K+KF S        D    RL+  +++R  G
Sbjct: 55  YIKPCKCQLMFVHANCALRKKSKFNSAKCSSCGGDSTIPRLATSTQLRKVG 105


>U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical
           protein ZK418.8 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 241 VPDQKPNSNQTISSKDLAEKVRLDTLDTETGLPKNARC 354
           +PD    S  T+  +DL     ++ +  ET LP+N  C
Sbjct: 203 IPDDPTRSLVTVRGRDLTALKEVEVVMKETVLPRNYNC 240


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 469  KRKMEKLTSYPDSYERCLCKMERLDRS 549
            K  ++ L   PD Y RC+C++  LDRS
Sbjct: 1049 KLAVQSLLEIPDQY-RCICELGLLDRS 1074


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 469  KRKMEKLTSYPDSYERCLCKMERLDRS 549
            K  ++ L   PD Y RC+C++  LDRS
Sbjct: 1065 KLAVQSLLEIPDQY-RCICELGLLDRS 1090


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 495 RCELFHFPFESRSRGC 448
           R  L HFP ES SRGC
Sbjct: 378 RISLKHFPIESMSRGC 393


>Z81054-6|CAE17756.1|  412|Caenorhabditis elegans Hypothetical
           protein F01D4.9 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 421 SLSSITHPTTTAAATFKRKMEKL-TSYPDSYERC 519
           S + +TH       ++KR M  + T+YPD++++C
Sbjct: 374 SSAVLTHQKRLRTRSYKRFMHYINTTYPDTFDQC 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,289
Number of Sequences: 27780
Number of extensions: 247859
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)