Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 420  QLVFDHSPYNNRGCDFQKENGKAH 491
            +L     PY     DF KE+GK H
Sbjct: 1017 RLSSSEKPYMFETVDFSKEDGKEH 1040


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/51 (19%), Positives = 23/51 (45%)
 Frame = +2

Query: 374 RGTHGDSVYRYRHKPSACLRSLTLQQPRLRLSKGKWKSSHRIPIHMNGVCV 526
           R ++G     +R +   CL+S   ++ +    +G W S     + + G+ +
Sbjct: 40  RVSNGGKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLAI 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,474
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)