Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060379.seq
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    30   1.2  
At1g10740.1 68414.m01225 expressed protein                             30   1.2  
At5g50100.1 68418.m06204 expressed protein contains Pfam domain ...    28   5.0  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   6.7  
At1g61080.1 68414.m06877 proline-rich family protein                   27   8.8  
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    27   8.8  

>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 234 TCSARSKAKFESDDLFKRLSRE---SEVRYTGYRDRPPEERQMRF 359
           T +   KAKF SD L K +SRE     +R+  YR+      Q RF
Sbjct: 44  TANREEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRF 88


>At1g10740.1 68414.m01225 expressed protein
          Length = 473

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 178 LPFDSIYEQPKPRFIFKMPRVVPDQKPNSNQTISS 282
           L +DSI+++ +     K+P+ +P+Q P+S ++ SS
Sbjct: 431 LIYDSIFQRCRKHVFRKIPQTLPNQSPSSPRSSSS 465


>At5g50100.1 68418.m06204 expressed protein contains Pfam domain
           PF04134: Protein of unknown function, DUF393
          Length = 214

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 327 DRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGCDFQKENGKAHIV 497
           D P   R++  +    E H  I F    +N     D+SP +N+G D++   G+ H +
Sbjct: 82  DCPLCMREVNMLMERNEKHGTIKFVDISSN-----DYSPEDNQGLDYKTVMGQIHAI 133


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 474 PFESRSRGCCRVSDRRQAEGLCRYR 400
           P+ SR++  CR+SD  Q   LCR R
Sbjct: 6   PYFSRAKPPCRLSDPAQPHMLCRRR 30


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 323 PRPASRRTPDAVHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPRL--RLSKGKWKSSHR 496
           P+P+S   P    + +  G++  S  R    P   L+++++++ R     S  KW  +  
Sbjct: 37  PKPSSSPIPIRSSKSILSGSYLTSSRRVS-SPIGNLKNISVKEARSPKTSSSPKWTGNFI 95

Query: 497 IPIHMNGVCVRWRGWIDLERLDGA 568
           + + +      +R  IDL  LDG+
Sbjct: 96  LMVELRRKIFTFRDIIDLSTLDGS 119


>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 465 SRSRGCCRVSDRRQAEGLCRYR 400
           SR++  CRVSD  Q   LCR R
Sbjct: 4   SRTKPPCRVSDPAQPHNLCRRR 25


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,795
Number of Sequences: 28952
Number of extensions: 237422
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)