Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060378.seq
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.74 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   3.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   9.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 536 TSPALAPSTRRTAATSPSGVA 598
           TSPA AP    T++ SP+ VA
Sbjct: 28  TSPAAAPPPATTSSGSPASVA 48


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 313 PSSLSPTAIQL*RCALREH 369
           P + +PT   + RCALR+H
Sbjct: 94  PQTSAPTGPPIVRCALRKH 112


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 301 HRGEPSSLSPTAIQ 342
           H GEP+ L+P  IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 532 DDLASACAQYKKDGCH 579
           D++A  CA  +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 644 FSXIAWTRGVRPIFSTQRHLAKWQPSFLYWAQALARS 534
           F+ I    G  P+F  +     ++PS  + ++ LA S
Sbjct: 463 FAVINVFSGELPVFLQEHRNGMYRPSIYFISKTLAES 499


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 644 FSXIAWTRGVRPIFSTQRHLAKWQPSFLYWAQALARS 534
           F+ I    G  P+F  +     ++PS  + ++ LA S
Sbjct: 463 FAVINVFSGELPVFLQEHRNGMYRPSIYFISKTLAES 499


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,650
Number of Sequences: 336
Number of extensions: 3861
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)