Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060378.seq
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.1  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.6  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   7.4  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   7.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.8  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 284 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 463
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 464 GIK 472
            ++
Sbjct: 552 PLR 554


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 461  PGIKVDKGVVPLFGSETNAPPRVWTTSPALAPSTRRTAATSPS 589
            PG       +P   S +   P    TSP+ +P++   + TSPS
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -3

Query: 406 LVKGLVEQ---DHTRDVLGEHSVRAE*QLAITTTV----LLCVLHADVLQTLAHCTGGSS 248
           LV+ +VE    ++T     + +VR    L I T +    LL V+  ++++ +AH TGG  
Sbjct: 628 LVRKIVEYSDLEYTSVCPWDKNVRLGDSLLIPTRIYVKPLLHVIRKNIVKGMAHITGGGL 687

Query: 247 AARIP 233
              +P
Sbjct: 688 VENVP 692


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 601 LKIGRTPLVQAXQENANVLAVR 666
           LK+G  P V+  QEN N   +R
Sbjct: 92  LKVGSKPTVELKQENENTYQIR 113


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 156 WTLLVIFLFLY*LQHE-RLALFGSATTQVMLGWHNVVIIYSLLAK 25
           W L+ + +  + L H+   ALF S     MLG+HN    Y L  K
Sbjct: 27  WKLIKLLICKFLLFHDFGTALFTSLVKASMLGFHNWRRTYWLYLK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,555
Number of Sequences: 5004
Number of extensions: 57065
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)