Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060378.seq
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 89 3e-18
08_01_0142 - 1121762-1122822,1123087-1123114 89 4e-18
05_04_0255 + 19462668-19462695,19463443-19464491 89 4e-18
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 86 2e-17
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 80 1e-15
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 74 9e-14
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 34 0.088
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639... 30 1.4
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 30 1.9
10_02_0175 - 6207485-6207898 28 7.7
08_02_1000 + 23433447-23433946,23434078-23434279 28 7.7
08_01_0955 + 9478018-9478773 28 7.7
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023... 28 7.7
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +2
Query: 287 IGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPG 466
I VEN EENRR R+LLF++ L +++SGVILF ETLYQK DG P V +L++ G++PG
Sbjct: 43 INVENVEENRRSLRELLFTTPGAL-QHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPG 101
Query: 467 IKVDKGVVPLFGS 505
IKVDKG V + G+
Sbjct: 102 IKVDKGTVEVAGT 114
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/51 (52%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIG-RTPLVQAXQENANVLA 660
E TTQG DDL CA+Y + G FAKWR VLKIG P + NA LA
Sbjct: 117 ETTTQGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLA 167
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 88.6 bits (210), Expect = 4e-18
Identities = 44/77 (57%), Positives = 54/77 (70%)
Frame = +2
Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
L IGVEN EENRR R+LLF++ L + +SGVILF ETLYQ DGTP V +L G+
Sbjct: 40 LASIGVENVEENRRALRELLFTAPGAL-DCLSGVILFEETLYQSTRDGTPFVDVLAAAGV 98
Query: 458 IPGIKVDKGVVPLFGSE 508
+ GIKVDKG V L G++
Sbjct: 99 LAGIKVDKGTVELAGTD 115
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/53 (49%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIGRT---PLVQAXQENANVLA 660
E TTQG D L C +Y G FAKWR VL IGR P A NA LA
Sbjct: 117 ETTTQGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLA 169
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 88.6 bits (210), Expect = 4e-18
Identities = 42/74 (56%), Positives = 54/74 (72%)
Frame = +2
Query: 287 IGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPG 466
I VEN EENRR R+LLF + L + +SGVILF ETLYQK DG P V +L++ G++PG
Sbjct: 43 INVENVEENRRSLRELLFCTPGAL-QYLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPG 101
Query: 467 IKVDKGVVPLFGSE 508
IKVDKG + + G+E
Sbjct: 102 IKVDKGTIEVAGTE 115
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/51 (54%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIG-RTPLVQAXQENANVLA 660
E TTQG DDL CA+Y + G FAKWR VLKIG P A NA LA
Sbjct: 117 ETTTQGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLAIDLNAQGLA 167
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 86.2 bits (204), Expect = 2e-17
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +2
Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
L IG+ENTE NR+ YR LL ++ L + ISG ILF ETLYQ DG +V +L ++ I
Sbjct: 73 LASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTVDGKKIVDILTEQKI 131
Query: 458 IPGIKVDKGVVPLFGSETNA 517
+PGIKVDKG+VPL GS +
Sbjct: 132 VPGIKVDKGLVPLAGSNNES 151
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/61 (44%), Positives = 31/61 (50%)
Frame = +1
Query: 478 QGCRPAVRIGNECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIGRTPLVQAXQENANVL 657
+G P NE QGLD LAS A Y + G FAKWR V+ I P A +E A L
Sbjct: 139 KGLVPLAGSNNESWCQGLDGLASREAAYYQQGARFAKWRTVVSIPNGPSELAVKEAAWGL 198
Query: 658 A 660
A
Sbjct: 199 A 199
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +2
Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
L I VEN E NR+ R+LLF++ + +SGVILF ETLYQ GTP V +L+ G+
Sbjct: 231 LASINVENVEPNRQALRELLFTTPGAF-QYLSGVILFEETLYQSTAAGTPFVDVLKAGGV 289
Query: 458 IPGIKVDKGVVPLFGS 505
+PGIKVDKG V + G+
Sbjct: 290 VPGIKVDKGTVDIAGT 305
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIGRT--PLVQAXQENANVLA 660
E TTQGLD L + CA+Y + G FAKWR VLKIG P A ++NA LA
Sbjct: 308 ETTTQGLDSLGARCAKYYEAGARFAKWRAVLKIGAAGEPSELAVKQNAEGLA 359
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 192 ELKKIAQAIVAPAKGILAADE 254
EL K A+ I P KGILAADE
Sbjct: 202 ELIKTAKYIATPGKGILAADE 222
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +2
Query: 305 EENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKG 484
+ NR+ YR LL ++ L + ISG ILF ETLYQ DG +V +L ++GI+PGI VDKG
Sbjct: 189 DRNRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTVDGRRIVDVLAEQGIVPGINVDKG 247
Query: 485 VVPLFGSE 508
+VPL GS+
Sbjct: 248 LVPLAGSD 255
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 34.3 bits (75), Expect = 0.088
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 428 LVSLLEKKGIIPGIKVDKGVVPLFGS--ETNAPPRVWTTSPALAPSTRRTAAT 580
+ SL KKG G K GVV + G ++ A + TSPA PST+ TA T
Sbjct: 216 IASLASKKGASAGQKRRIGVVRIAGGFFDSEASSQEMPTSPATHPSTQHTALT 268
>01_01_0010 -
62670-62783,62877-63020,63339-63431,63665-63779,
63902-64152,64248-64431,64694-64950
Length = 385
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIGRTPLVQAXQENA 648
ECT QGL S Y KDG F G TPL ++ A
Sbjct: 205 ECTLQGLQAAYSGSTPYVKDGLLFYNKHAHYLAGITPLALVWKDEA 250
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 281 QDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGII 460
Q I V N+ + + +L+ + + V + +I+ TL+Q + DG P+ LL+ I
Sbjct: 585 QFIDVFNSSPDETAFFRLMLNREGV----VGSLIMIQPTLFQYSFDGPPIPVLLDVSSIS 640
Query: 461 PGI 469
P +
Sbjct: 641 PDV 643
>10_02_0175 - 6207485-6207898
Length = 137
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 504 RKRMHHPGSGRPRQRLRPVQEGRLPLRQVALRAEDW 611
R+R H G GR R+R R + R A R +W
Sbjct: 28 RRRRHGCGGGRKRRRRRRAEAATARWRAAAARRGEW 63
>08_02_1000 + 23433447-23433946,23434078-23434279
Length = 233
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 628 GRGVFGQSSARNATWRSGSRPSCTGRKRWRGRPD 527
G G + Q + WR R +G+ RWR +PD
Sbjct: 122 GSGGWRQLATAAVVWRWWWRQLASGKWRWRSQPD 155
>08_01_0955 + 9478018-9478773
Length = 251
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = +2
Query: 500 GSETNAPPRVWTTSPAL----APSTRRTAATSPS 589
GS T APP WT + A PS R AA PS
Sbjct: 93 GSTTTAPPAAWTCTRAAPRCRCPSRCRRAAPPPS 126
>07_03_1053 -
23600983-23601550,23601947-23602105,23602192-23602357,
23602959-23603502,23604506-23604679,23605740-23605985
Length = 618
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 473 VDKGVVPLFGSETNAPPRVWTTSPALAPSTRRTAATSPSGVAC*RLAEHP 622
VD+ V L A R SPA P +R T P+G + L E P
Sbjct: 26 VDRRVAALAAGAAGAGARYKAMSPARLPISREPCLTIPAGFSPSALLESP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,233,456
Number of Sequences: 37544
Number of extensions: 472155
Number of successful extensions: 1619
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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