Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060378.seq
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 117 1e-26
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 117 1e-26
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 31 0.64
SB_37630| Best HMM Match : rve (HMM E-Value=4e-24) 31 0.84
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 30 1.5
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 28 5.9
SB_31556| Best HMM Match : rve (HMM E-Value=4.7e-30) 28 7.9
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 117 bits (281), Expect = 1e-26
Identities = 57/77 (74%), Positives = 64/77 (83%)
Frame = +2
Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
L +IGVENTEENRR YRQLLF+S +S ISGVILFHET+YQKADDGTP V LL +GI
Sbjct: 41 LANIGVENTEENRRLYRQLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRDQGI 100
Query: 458 IPGIKVDKGVVPLFGSE 508
IPGIKVDKGVV L G++
Sbjct: 101 IPGIKVDKGVVVLAGTD 117
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/51 (72%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKI-GRTPLVQAXQENANVLA 660
E TTQGLD L CAQYKKDGC FAKWRCVLKI TP A +ENANVLA
Sbjct: 120 ETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLA 170
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 174 TPELQEELKKIAQAIVAPAKGILAADE 254
TPEL+ ELK+IA+AIVA KGILAADE
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADE 32
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 117 bits (281), Expect = 1e-26
Identities = 57/77 (74%), Positives = 64/77 (83%)
Frame = +2
Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
L +IGVENTEENRR YRQLLF+S +S ISGVILFHET+YQKADDGTP V LL +GI
Sbjct: 41 LANIGVENTEENRRLYRQLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRDQGI 100
Query: 458 IPGIKVDKGVVPLFGSE 508
IPGIKVDKGVV L G++
Sbjct: 101 IPGIKVDKGVVVLAGTD 117
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/51 (72%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = +1
Query: 511 ECTTQGLDDLASACAQYKKDGCHFAKWRCVLKI-GRTPLVQAXQENANVLA 660
E TTQGLD L CAQYKKDGC FAKWRCVLKI TP A +ENANVLA
Sbjct: 120 ETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLA 170
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 174 TPELQEELKKIAQAIVAPAKGILAADE 254
TPEL+ ELK+IA+AIVA KGILAADE
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADE 32
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 53 TLCQPSITCVVADPKSASLSCCN*YKNKKITNNVHLLSIPNS*AAGGAQEDR----SSNC 220
T CQ TC + + +C Y + TNNV+ + P+ GG +D S NC
Sbjct: 3883 TPCQNGGTCASPSSSNYTCTCAPGYTGENCTNNVNECNDPDLCKNGGVCKDSFGSYSCNC 3942
Query: 221 SS 226
SS
Sbjct: 3943 SS 3944
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 358 LREHLWCDPVPRDPLPEG*RWNPSGLPAGEEGHHPRHQGRQGCRPAVRI---GNECTTQG 528
L LW + +P+ W+ + LP+ + G QG QG AVR GN C T G
Sbjct: 534 LMSRLWMPVMKNKWMPDELTWHGASLPSKQTG---LLQGHQGAVRAVRFNSDGNYCLTCG 590
Query: 529 LDDLASACAQYK 564
D + + +K
Sbjct: 591 SDKILALWNPHK 602
>SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)
Length = 442
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 189 EELKKIAQAIVAPAKGILAADEPPVQWA--SVCRTSAWRTQRRTVVVIANCYSALTLCSP 362
E+ KK + I + +ADE ++W S W ++ + V AN Y ALTL
Sbjct: 68 EQCKKKKEHISDDPIVLSSADENTIKWKKWSYANGKVWSSEGKEVACKANIYDALTLAHT 127
Query: 363 R 365
R
Sbjct: 128 R 128
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 171 PTPELQEELKKIAQAIVAPAKGIL-AADEPP-VQWASVCRTSAWRTQRRTVVVIANCYSA 344
PTP + + A APA G++ AA PP + +SVC T +T A ++
Sbjct: 251 PTPSASHDSDVVVIADNAPAGGLVTAAPSPPDKKQSSVCHTPPKTPSSKTTPADAETKTS 310
Query: 345 LTLCSPRTS 371
+ SP+T+
Sbjct: 311 PSTTSPQTN 319
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 368 ISGVILFHETLYQKADDGTPLVSLLEKK 451
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 631 LGRGVFGQSSARNATWRSGSRPSCTGRKRWRGRPDPG 521
LGRG G+ + WR+G RP RW G G
Sbjct: 177 LGRGRGGRGVGLHNAWRAGKRPFLYRGGRWAGHGGAG 213
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 467 IKVDKGVVPLFGSETNAPPRVWTTSPALAPSTRRTAATSPSGVAC*RLAEHPSSKLXRKT 646
+K+D +V + S + P T S PST RT +T PS PS+ + +T
Sbjct: 363 LKIDIDLVDIITSTPSTPCTPSTPSTPSTPSTPRTPST-PSTPCTPSTPSTPSTPITPRT 421
Query: 647 P 649
P
Sbjct: 422 P 422
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 418 IVSLLVKGLVEQDHTRDVLGEHSVRAE*QLAITTTVLLC 302
+V+LLV G ++ V+G+ SV + ++ I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETGVVGDISVVVDTRVIIDTTVLKC 463
>SB_31556| Best HMM Match : rve (HMM E-Value=4.7e-30)
Length = 322
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 195 LKKIAQAIVAPAKGILAADEPPVQ---WASVCRTSAWRTQRRTVVVIANCYSALTLCSPR 365
L+KI + + K + ADE ++ W S W + + V AN Y ALTLC R
Sbjct: 15 LEKITE-LKLQTKILSFADENTIKRKKW-SYANGKVWSSDGKEVACKANIYDALTLCHTR 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,243,767
Number of Sequences: 59808
Number of extensions: 503070
Number of successful extensions: 1519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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