Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060378.seq
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical pr...   115   3e-26
D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1 pr...   115   3e-26
U13070-15|AAC46646.1|  366|Caenorhabditis elegans Hypothetical p...    84   7e-17
U13070-14|AAM22057.1|  259|Caenorhabditis elegans Hypothetical p...    84   7e-17
D83739-1|BAA12092.1|  366|Caenorhabditis elegans aldolase Ce2 pr...    84   7e-17
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    30   1.7  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    29   2.2  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    28   6.8  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U40799-5|AAA81483.2|  174|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    28   6.8  
Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical
           protein T05D4.1 protein.
          Length = 365

 Score =  115 bits (277), Expect = 3e-26
 Identities = 52/76 (68%), Positives = 65/76 (85%)
 Frame = +2

Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
           L  IG+ENTEENRR+YRQLLF++ A L++ ISGVI+FHET YQK DDG P  +LL+++GI
Sbjct: 44  LNSIGLENTEENRRKYRQLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGI 103

Query: 458 IPGIKVDKGVVPLFGS 505
           IPGIKVDKGVVP+ G+
Sbjct: 104 IPGIKVDKGVVPMAGT 119



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 39/73 (53%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +1

Query: 445 EEGHHPRHQGRQGCRPAVRIGNECTTQGLDDLASACAQYKKDGCHFAKWRCVLKI-GRTP 621
           E+G  P  +  +G  P      E TTQGLDDL + CAQYKKDG  FAKWRCV KI   TP
Sbjct: 100 EQGIIPGIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTP 159

Query: 622 LVQAXQENANVLA 660
            V A +E A+ LA
Sbjct: 160 SVTALKEIASNLA 172



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 150 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADE 254
           M++Y Q+ T   ++EL+ IA AIV P KGILAADE
Sbjct: 1   MASYSQFLTKAQEDELRSIANAIVTPGKGILAADE 35


>D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1
           protein.
          Length = 366

 Score =  115 bits (277), Expect = 3e-26
 Identities = 52/76 (68%), Positives = 65/76 (85%)
 Frame = +2

Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
           L  IG+ENTEENRR+YRQLLF++ A L++ ISGVI+FHET YQK DDG P  +LL+++GI
Sbjct: 44  LNSIGLENTEENRRKYRQLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGI 103

Query: 458 IPGIKVDKGVVPLFGS 505
           IPGIKVDKGVVP+ G+
Sbjct: 104 IPGIKVDKGVVPMAGT 119



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 39/75 (52%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = +1

Query: 445 EEGHHPRHQGRQGCRPAVRIGNECTTQGLDDLASACAQYKKDGCHFAKWRCVLKI-GRTP 621
           E+G  P  +  +G  P      E TTQGLDDL + CAQYKKDG  FAKWRCV KI   TP
Sbjct: 100 EQGIIPGIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTP 159

Query: 622 LVQAXQENANVLAVR 666
            V A +E A+ L  R
Sbjct: 160 SVTALKEIASNLGSR 174



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 150 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADE 254
           M++Y Q+ T   ++EL+ IA AIV P KGILAADE
Sbjct: 1   MASYSQFLTKAQEDELRSIANAIVTPGKGILAADE 35


>U13070-15|AAC46646.1|  366|Caenorhabditis elegans Hypothetical
           protein F01F1.12a protein.
          Length = 366

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 41/76 (53%), Positives = 55/76 (72%)
 Frame = +2

Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
           L  I +EN E NR++YRQLLF++   L+++ISGVIL+ ET +Q  D G     LL K+GI
Sbjct: 48  LDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGI 106

Query: 458 IPGIKVDKGVVPLFGS 505
           +PGIK+D GVVPL G+
Sbjct: 107 VPGIKLDLGVVPLAGT 122



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 35/61 (57%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 481 GCRPAVRIGNECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIG-RTPLVQAXQENANVL 657
           G  P      E TTQGLD LA   A +KK GC FAKWRCVL IG  TP      ENANVL
Sbjct: 115 GVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVL 174

Query: 658 A 660
           A
Sbjct: 175 A 175



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 174 TPELQEELKKIAQAIVAPAKGILAADE 254
           T   ++EL +IA  IV   KGILAADE
Sbjct: 13  TQAQKDELHQIALKIVQDGKGILAADE 39


>U13070-14|AAM22057.1|  259|Caenorhabditis elegans Hypothetical
           protein F01F1.12b protein.
          Length = 259

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 41/76 (53%), Positives = 55/76 (72%)
 Frame = +2

Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
           L  I +EN E NR++YRQLLF++   L+++ISGVIL+ ET +Q  D G     LL K+GI
Sbjct: 48  LDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGI 106

Query: 458 IPGIKVDKGVVPLFGS 505
           +PGIK+D GVVPL G+
Sbjct: 107 VPGIKLDLGVVPLAGT 122



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 35/61 (57%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 481 GCRPAVRIGNECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIG-RTPLVQAXQENANVL 657
           G  P      E TTQGLD LA   A +KK GC FAKWRCVL IG  TP      ENANVL
Sbjct: 115 GVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVL 174

Query: 658 A 660
           A
Sbjct: 175 A 175



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 174 TPELQEELKKIAQAIVAPAKGILAADE 254
           T   ++EL +IA  IV   KGILAADE
Sbjct: 13  TQAQKDELHQIALKIVQDGKGILAADE 39


>D83739-1|BAA12092.1|  366|Caenorhabditis elegans aldolase Ce2
           protein.
          Length = 366

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 41/76 (53%), Positives = 55/76 (72%)
 Frame = +2

Query: 278 LQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI 457
           L  I +EN E NR++YRQLLF++   L+++ISGVIL+ ET +Q  D G     LL K+GI
Sbjct: 48  LDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGI 106

Query: 458 IPGIKVDKGVVPLFGS 505
           +PGIK+D GVVPL G+
Sbjct: 107 VPGIKLDLGVVPLAGT 122



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 35/61 (57%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 481 GCRPAVRIGNECTTQGLDDLASACAQYKKDGCHFAKWRCVLKIG-RTPLVQAXQENANVL 657
           G  P      E TTQGLD LA   A +KK GC FAKWRCVL IG  TP      ENANVL
Sbjct: 115 GVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVL 174

Query: 658 A 660
           A
Sbjct: 175 A 175



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 174 TPELQEELKKIAQAIVAPAKGILAADE 254
           T   ++EL +IA  IV   KGILAADE
Sbjct: 13  TQAQKDELHQIALKIVQDGKGILAADE 39


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 501 DRKRMHHPGSGRPRQRLRPVQEGRLPLRQVALRAEDWPNTPRPSYXGKRQCFGR 662
           +RK +   G+GRP  ++  V + R PL+   L  E++  T R     +R+   R
Sbjct: 61  ERKSIKSIGAGRPFAKINMVDKQRAPLKITPLSDEEFRKTMRKRMEMERERLAR 114


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 509 TNAPPRVWTTSPALAPSTRRTAATSPSGVAC*RLAEH 619
           +N    + +TSP LA ST RTA T+ S V+  +   H
Sbjct: 328 SNLTSALTSTSPLLASSTERTATTATSSVSTPKHPHH 364


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
           protein T04H1.4b protein.
          Length = 1312

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 ENTEENRRRYRQLLFSSDA 352
           E TEEN +RY QL+  SD+
Sbjct: 798 EQTEENEKRYEQLVSESDS 816


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4a protein.
          Length = 1298

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 ENTEENRRRYRQLLFSSDA 352
           E TEEN +RY QL+  SD+
Sbjct: 784 EQTEENEKRYEQLVSESDS 802


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 ENTEENRRRYRQLLFSSDA 352
           E TEEN +RY QL+  SD+
Sbjct: 784 EQTEENEKRYEQLVSESDS 802


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 504 RKRMHHPGSGRPRQRLRPVQEGR 572
           RK  H PG GRP+    P + GR
Sbjct: 783 RKETHPPGFGRPKSEENPRETGR 805


>U40799-5|AAA81483.2|  174|Caenorhabditis elegans Hypothetical
           protein F42C5.6 protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 490 PAVRIGNECTTQGLDDLASACAQYKKDGC-HFAKWRCVLKI 609
           P  R+GN+C  + L      C    K+ C H   W  ++ I
Sbjct: 76  PTHRVGNQCPEETLLSFYKCCGHLNKECCFHLRVWIVIMII 116


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  YYFASKEYIITTLCQPSITCVVAD 91
           ++FA+ E  IT LCQP   C + D
Sbjct: 340 FFFAANEANITNLCQPHAYCEMHD 363


>Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical
           protein W01B6.3 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 313 PSSLSPTAIQL*RCALREHLWCDPVPRDPLP 405
           P +++ T   + RC   +  WCD  PR PLP
Sbjct: 344 PDTMNSTTTLIGRC---DFDWCDDTPRVPLP 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,515
Number of Sequences: 27780
Number of extensions: 354724
Number of successful extensions: 1183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)