Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060378.seq
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 22/50 (44%), Positives = 26/50 (52%)
 Frame = +2

Query: 44  IITTLCQPSITCVVADPKSASLSCCN*YKNKKITNNVHLLSIPNS*AAGG 193
           II TL   S +CV+A   SA +S     K+ K  N VH   I NS  AGG
Sbjct: 241 IINTLLSISASCVIAFATSALVS-----KDSKF-NMVH---IQNSTLAGG 281


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 587 LAKW-QPSFLYWAQALARSSRP 525
           +++W +  FLYW   + R SRP
Sbjct: 328 MSEWVKVVFLYWLPCILRMSRP 349


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 225 PAKGILAADEPPVQWASVCRTSAW 296
           P K +     PP  W  V   SAW
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGGSAW 173


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 225 PAKGILAADEPPVQWASVCRTSAW 296
           P K +     PP  W  V   SAW
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGGSAW 173


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 252 EPPVQWASVCRTSAWR 299
           +PP  W SV   SAW+
Sbjct: 159 QPPNNWLSVFWGSAWQ 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,900
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)