Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060377.seq
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    30   0.27 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    29   0.63 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    25   7.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.8  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 50  LSKVVIIQYSCYSLHYF*TITRNFIYS 130
           L++ +I+ YS  S+H   T+TR FIYS
Sbjct: 529 LNRRLILHYSFESVHQLKTLTRKFIYS 555


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 189 FGSAENRRSPF-SIFDTNPRILTK 257
           +G   N +SPF  IF TNPRIL++
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILSR 203


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 72  NIVVIHYTISKQ*REILYTALIKINCFFYNSHTVSP 179
           N+  +HY   K+    L   LI  NCF YNSH   P
Sbjct: 352 NLKNLHYNSKKEFVHDLM--LIWSNCFLYNSHPDHP 385


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 280 SWSSLIGHLVKMRGFVSKIEKG 215
           +W+SL+GHL  +   +S    G
Sbjct: 33  NWTSLVGHLKTLHSLISNYTNG 54


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 525 LLRGSHRATITSSK*PPNSDFRSSMRSLPYSRVKACDMACRCMLDLVVNISMI 367
           L R S+    +SSK   NS   +S+ +LP S    C ++ R   D +V  + +
Sbjct: 183 LQRRSYETPQSSSKKKTNSKETTSLETLPTSIYFDCSISVRDCHDSLVTFNRV 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,852
Number of Sequences: 5004
Number of extensions: 49502
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)