Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060377.seq
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 58 4e-09
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 57 1e-08
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 57 1e-08
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 56 3e-08
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 50 2e-06
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 49 3e-06
07_03_1563 - 27746977-27747180,27747280-27747369,27747529-277477... 39 0.003
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 31 0.85
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 29 2.0
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 27 8.0
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 27 8.0
05_06_0155 - 26028923-26030263 27 8.0
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 27 8.0
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +2
Query: 311 EDAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFE 490
ED LR A KG+GT+E+ II IL R QR+AI +A+ YG +L+ L E+ G FE
Sbjct: 15 EDCEQLRKAFKGWGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEELLRALNDEIHGKFE 74
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +2
Query: 326 LRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDVIVA 505
+R A+ G GTDE ++ I+TTR+ + + I +A+ + L + + +ED+++A
Sbjct: 177 IRLALGGMGTDENSLTRIITTRAEVDLKLIKEAYQKRNSVPLERAVAKDTTRDYEDILLA 236
Query: 506 L 508
L
Sbjct: 237 L 237
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 341 KGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDVIVAL 508
K + DE II ILTTRS Q A ++ ++G + +DLK++ F + A+
Sbjct: 109 KAYSDDE--IIRILTTRSKAQLLATFNSYNDQFGHPITKDLKADPKDEFLGTLRAI 162
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +2
Query: 284 VGVPNF--NAVEDAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIE 457
+ VPN + EDA ++R A++G+GTDE A+I+IL R+ QR I+ A+ Y L++
Sbjct: 50 ISVPNPAPSPTEDAESIRKAVQGWGTDENALIEILGHRTAAQRAEIAVAYEGLYDETLLD 109
Query: 458 DLKSELGGHFEDVIV 502
L SEL G F ++
Sbjct: 110 RLHSELSGDFRSALM 124
Score = 35.5 bits (78), Expect = 0.030
Identities = 12/64 (18%), Positives = 34/64 (53%)
Frame = +2
Query: 317 AAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDV 496
A +R ++ G GTDE+ + + +R+ + + + + + Y + D++ + G++ +
Sbjct: 301 AEVIRTSILGLGTDEEMLTRGIVSRAEVDMEKVKEEYKVRYNTTVTADVRGDTSGYYMNT 360
Query: 497 IVAL 508
++ L
Sbjct: 361 LLTL 364
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 287 GVPNFNAVEDAAALRAAMKGFGTDEQA--IIDILTTRSNMQRQAISQAFTREYGRDLIED 460
GV A+ +AA L A+ G G ++ I+ TRS Q + + +E+G+ + E
Sbjct: 214 GVDGELAIAEAAELHDAVVGRGQALHGDDVVRIVGTRSKAQLAVTLERYRQEHGKGIDEV 273
Query: 461 LKSELGGHFEDVIVA 505
L G V+ A
Sbjct: 274 LDGRRGDQLAAVLKA 288
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +2
Query: 311 EDAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFE 490
EDA AL A +G+GTDEQA+I +L R QR+ I + Y +LI+ L+SEL G E
Sbjct: 15 EDADALLKAFQGWGTDEQAVIGVLAHRDATQRKQIRLTYEENYNENLIQRLQSELSGDLE 74
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 311 EDAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFE 490
+D LR A +G+GT+E II IL R QR+AI +A+ YG +L+ + E+ G FE
Sbjct: 15 DDCDQLRKAFQGWGTNEALIISILAHRDAAQRRAIRRAYADTYGEELLRSITDEISGDFE 74
Query: 491 DVIV 502
++
Sbjct: 75 RAVI 78
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 326 LRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDVIVA 505
+R A+ G GTDE ++ I+TTR+ + + I++A+ + L + + G +E +++A
Sbjct: 252 IRLAIAGMGTDENSLTRIITTRAEVDLKLITEAYQKRNSVPLERAVAGDTSGDYERMLLA 311
Query: 506 L 508
L
Sbjct: 312 L 312
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +2
Query: 341 KGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDVIVAL 508
K +G DE II ILTTRS Q A + EYG + +DLK++ F + A+
Sbjct: 184 KAYGDDE--IIRILTTRSKAQLIATFNRYNDEYGHPINKDLKADPKDEFLSTLRAI 237
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 350 GTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDVIVAL 508
G+ + +++I R Q A+ QA+ + R L ED+ + G F ++V L
Sbjct: 102 GSGSRVLVEIACARGPAQLFAVRQAYHERFKRSLEEDVAAHATGDFRKLLVPL 154
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +2
Query: 317 AAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDV 496
A LR +MKG GTD+ +I ++ TR+ + Q I + ++Y + L E + SE G++
Sbjct: 235 AKVLRKSMKGMGTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAIHSETSGNYRTF 294
Query: 497 IVAL 508
+++L
Sbjct: 295 LLSL 298
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = +2
Query: 284 VGVPNFNAVE--------DAAAL-RAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTRE 436
VG+P + E DA L +A K GTDE+ I I T RS +++ A+
Sbjct: 140 VGIPRYEGPEVDPTIVTHDAKDLYKAGEKRLGTDEKTFIRIFTERSWAHMASVASAYHHM 199
Query: 437 YGRDLIEDLKSELGGHFEDVIVAL 508
Y R L + +KSE G+FE ++ +
Sbjct: 200 YDRSLEKVVKSETSGNFELALLTI 223
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +2
Query: 317 AAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFEDV 496
A L AMKG GT++ +I ++TTR+ + Q I + R Y R L + + SE G++
Sbjct: 278 AKVLHEAMKGLGTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSLADAVHSETSGNYRTF 337
Query: 497 IVAL 508
+++L
Sbjct: 338 LLSL 341
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +2
Query: 314 DAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFED 493
DA L A KGFG D A+ IL R QR I + + Y +DL+ L +EL GH +
Sbjct: 16 DAIDLHRAFKGFGCDATAVTAILAHRDASQRALIRRHYAAVYHQDLLHRLAAELSGHHKR 75
Query: 494 VIV 502
++
Sbjct: 76 AVL 78
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 305 AVEDAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYG 442
A DAA L A+ G TD +A +++ +R+ Q + QA+ +G
Sbjct: 85 ASRDAAVLHQALNGDVTDMRAATEVVCSRTPSQLLVVRQAYLARFG 130
>07_03_1563 -
27746977-27747180,27747280-27747369,27747529-27747753,
27748002-27748115,27748218-27748423,27748757-27748832
Length = 304
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 290 VPNFNAVEDAAALRAAMKGFGTDEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKS 469
V A + A A++ + G DE ++ I+TTRS Q +A Q + ++G D+ ED+ S
Sbjct: 154 VVRMEASQLAEAIKKKKQPRGEDE--VVRIVTTRSKSQLRATFQRYREDHGSDIAEDIDS 211
Query: 470 ELGGHF 487
G F
Sbjct: 212 HCIGQF 217
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 30.7 bits (66), Expect = 0.85
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 198 RIQISNLVTLYDCCRKNNLFLLM 130
R+Q NLVTLY CC ++N LL+
Sbjct: 636 RVQHCNLVTLYGCCLESNTPLLV 658
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 213 IGGFQRIQISNLVTLYDCCRKNNLFLLM 130
IG +Q NLV LY CC + N LL+
Sbjct: 708 IGMISALQHPNLVKLYGCCTEGNQLLLV 735
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 332 AAMKGFGT-DEQAIIDILTTRSNMQRQAISQAFTREYGRDLIEDLKSELGGHFE 490
A G G+ DE I+++ + RS Q + ++ YG D + LK G FE
Sbjct: 178 AKNSGMGSVDEAVILEMFSKRSIPQLRLAFCSYKHIYGHDYTKALKKNGFGEFE 231
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 244 AS*PNGLSESSNCSRSA*LQCRRRCSSFEGRHERLWY 354
AS PNG + C QC C +F G + L Y
Sbjct: 348 ASTPNGCKDIDECGHRETYQCYGECINFPGGFDCLCY 384
>05_06_0155 - 26028923-26030263
Length = 446
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 474 NSDFRSSMRS-LPYSRVKACDMACRCMLDLVVNISMIA 364
N+ R +RS +P +R DM C C LD+ + + A
Sbjct: 65 NAPLREYLRSSVPSARAVVFDMFCACALDVAAELGLPA 102
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 198 RIQISNLVTLYDCCRKNNLFLLM 130
R+Q NLV LY CC ++N LL+
Sbjct: 716 RVQHRNLVKLYGCCLESNNPLLV 738
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,181
Number of Sequences: 37544
Number of extensions: 339008
Number of successful extensions: 888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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