Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060377.seq
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 385 SQYINDRLLVCTKAFHGGPQ 326
           S Y N   L CT  F GGPQ
Sbjct: 6   SMYNNVSPLQCTSPFLGGPQ 25


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +2

Query: 149 FFLQQSYSVTKLEIWIR*KPPITFLYF*YKSSH 247
           FF+       +++  +  + P+ F Y+ YK +H
Sbjct: 416 FFITDGEKAARMQAKVN-RQPVWFYYYTYKGAH 447


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +2

Query: 149 FFLQQSYSVTKLEIWIR*KPPITFLYF*YKSSH 247
           FF+       +++  +  + P+ F Y+ YK +H
Sbjct: 416 FFITDGEKAARMQAKVN-RQPVWFYYYTYKGAH 447


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 420 CDMACRCMLDLVVNISMIACSSV 352
           C   C+C  D   N + + CS +
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGL 783


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 556 PCNGAAPGTGTPQGESQSHD 497
           P +G  PG G P  +S + D
Sbjct: 210 PSSGLQPGEGLPMWKSDTSD 229


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +1

Query: 1   RHEEGCCFC 27
           RH + CC C
Sbjct: 350 RHSDSCCLC 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,322
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)