Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060376.seq
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.47 
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    27   1.4  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   3.3  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    26   4.4  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    25   7.7  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.7  

>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 78  IHIRGPRLLRALSSYHRQKHPEALRGH-LHMSHYACGT 188
           +H RG RLL      H   H E  + H LH+   ACG+
Sbjct: 38  LHFRGLRLLLLQCLSHFWDHDEKFKSHGLHVIDLACGS 75


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 392 RWDEAPLDKF*ARFMLSRLVQSLAQLLVGTP*IGAVVAPYLRRSSPRAIMRRSAITAESV 213
           +WD+  ++K   RF+  +    +A   +  P   A ++   R+  P  ++  SAI+   +
Sbjct: 203 KWDDDTIEKVVNRFVDIKFPTVIALNKIDHPDADANISKIARKEDPNRLVLASAISEVFL 262

Query: 212 LRLA 201
            RLA
Sbjct: 263 RRLA 266


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  PRLLRALSSYHRQKHPEALRGHLHMSHYACGT 188
           P+  R L S  R+KHPE L  H+H +H + GT
Sbjct: 755 PKAARLLISAIREKHPE-LPIHVH-THDSAGT 784


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   TRGHTTASSHGQSPTEQTGTXIGDHSHTWASI-TSGPIKLPPAEAPRSTTWPSS 163
           +R  T ASSH Q+PT++    +G+       +  + P +L   + P+  T P +
Sbjct: 48  SRKRTLASSHFQTPTKRIKYELGELQEEKTDLYPNFPAQLKENKKPKLPTTPQT 101


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 99  LLRALSSYHRQKHPEALRGHLHMSHYACGTFRTGSEPQHGLSSD 230
           LL  L   H  K  +A     H    ACG  R+G E ++   SD
Sbjct: 379 LLDKLLELHPSKRVKAKTALQHEFFNACGVTRSGFEAENPFRSD 422


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 50  EQTGTXIGDHSHTWASITSGP 112
           E+ G  +G HSH W +    P
Sbjct: 117 EEAGCEVGSHSHRWINYEGVP 137


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 258 GAPTEIWSDNGTNLRGADKELRQALDKATEHEASL 362
           G  ++I+    TNL   D E   ALDK T H ASL
Sbjct: 488 GEESDIFDSIETNLENLDIENNIALDKRT-HLASL 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,210
Number of Sequences: 5004
Number of extensions: 42848
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)