Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060376.seq
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 30 1.1
06_01_1205 - 10406603-10406651,10407013-10407476 29 1.9
05_01_0110 - 741968-742279 29 1.9
08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437 29 3.4
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 29 3.4
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 29 3.4
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 4.5
05_06_0088 - 25453249-25453282,25453369-25453461,25454111-254541... 28 4.5
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 4.5
11_03_0208 - 11682869-11683459 28 5.9
09_02_0590 - 10978335-10978728,10978855-10979044,10979130-109791... 28 5.9
03_06_0297 - 32924162-32924605 28 5.9
02_01_0302 - 2021221-2023305 28 5.9
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 27 7.8
01_06_0035 + 25782410-25783384,25784130-25784696 27 7.8
>01_06_0840 + 32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 105 RALSSYHRQK---HPEALRGHLHMSHYACGTFRTGSEPQHGLSSDGTPA 242
+ L++ H QK HP+ GH+ S + G F PQ S G+ A
Sbjct: 1200 KPLNAPHFQKSFNHPDGASGHIRSSRTSVGRFDQSRHPQRNNSGPGSSA 1248
>06_01_1205 - 10406603-10406651,10407013-10407476
Length = 170
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 71 GDHSHTWASITSGPIKLPPAEAPRSTTWPSSHVSLRV 181
GD H W S +L P A + PS+ +SLRV
Sbjct: 12 GDSPHRWEEANSKTPRLQPGSAGGRSAAPSAEMSLRV 48
>05_01_0110 - 741968-742279
Length = 103
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -3
Query: 474 RLGCSVAESAAFTARTILSQRRP*KARPVG*SAIG*VLSSLHAQSPCPKLGAAP 313
R+ + A+ R + R ARP G +S H SPC +LGAAP
Sbjct: 31 RIAARGRRAVAWEPRAAVGSPRATTARPGAPHRRGLGVSRRHQGSPCHRLGAAP 84
>08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437
Length = 667
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 99 LLRALSSYHRQKHPEALRGHLHMSHYACGTFRTGSE 206
LL L Y + K H H HYAC + T S+
Sbjct: 589 LLGFLGVYGKSKDTLEAHAHAHTQHYACNSILTPSQ 624
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 139 QKHYVAIFTCLTTRAVHLEPAA---SLSTDSAVMALRRMIARGELRRRYGAT 285
Q+H A FTC + HL+PA SL SAV A M L R +G T
Sbjct: 167 QEHARACFTCQQNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVHGKT 218
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 3 AREDTPPRPATGNHPPSRLAHXSATIHIRGPRLLRALSSYHRQKHPEALR 152
A TPP P HP + A A + + L AL R H +ALR
Sbjct: 14 AANPTPPSPPAAGHPDAAAADGGAAVRAVCEKALAAL---QRGNHAKALR 60
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 GTRGHTTASSHGQSPTEQTGTXIGDHSHTW---ASITSGPIKLPPAEAPRSTTWPSS 163
G H ASS G S Q + T+ AS T P PP+ PR+T+ PS+
Sbjct: 454 GCESHGAASSVGASVAGQAPQTASTTALTFSFPASTTLSPWWSPPSPHPRATSSPST 510
>05_06_0088 -
25453249-25453282,25453369-25453461,25454111-25454199,
25454603-25454665,25454935-25455024,25455204-25455264,
25455499-25455593,25455861-25455950,25456136-25456222,
25456992-25457303
Length = 337
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 251 AIMRRSAITAESVLRLAAGSKCTA 180
A++ RSA AE V+RL G C A
Sbjct: 17 AVLHRSAAAAEGVIRLPRGRACAA 40
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = -3
Query: 324 GAAPCRHPVNWCRCRSISPSELPARDHAPECHHC*VRAEARCRF*MYRTRSETCEDGHVV 145
GA PCRHP + RC + P R C VR R R R + C +
Sbjct: 72 GAPPCRHP-HRVRCVILGDIHAPPRHPRRRC----VRGHGRLRGQAAPRRRQACLSSFLA 126
Query: 144 LL 139
LL
Sbjct: 127 LL 128
>11_03_0208 - 11682869-11683459
Length = 196
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 324 GAAPCRHPVNWCRCRSISPSELPARDHAP 238
G AP R P C+CR + ++P R AP
Sbjct: 32 GRAPARRPREGCQCRRVL-HQVPPRPQAP 59
>09_02_0590 -
10978335-10978728,10978855-10979044,10979130-10979198,
10980061-10980187,10980562-10980824,10980928-10981076,
10981186-10981260,10983391-10983462,10983554-10983692,
10983796-10984265,10985278-10985854,10986997-10987063
Length = 863
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/88 (23%), Positives = 30/88 (34%)
Frame = +1
Query: 43 THRADWHTHRRPFTYVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLSTDS 222
T+ +D TH + Y P TTGR T+ V F + EP
Sbjct: 710 TYHSDSQTHISAAAAGSMGYIDPEYYTTGRLTESSDVYSFGVVLLEITTGEPPIIPENGH 769
Query: 223 AVMALRRMIARGELRRRYGATTAPIYGV 306
V +++ I G + A Y V
Sbjct: 770 IVQRVKQKIVSGNISSVADAHLGGAYNV 797
>03_06_0297 - 32924162-32924605
Length = 147
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 333 PKLGAAPCRHPVNWCRCRSISPSELPARDHAPE 235
P++GAA R RC P+E+P D + E
Sbjct: 27 PQVGAAAARRAAVGVRCGGTPPAEVPGTDRSLE 59
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = +3
Query: 15 TPPRPATGNHPPSRLAHXS-ATIHIRGPRLLRALSSYHRQKHPEALRGHLHMSHYACGTF 191
+PP P++G PPS S T H+ G H HP S + T
Sbjct: 584 SPPSPSSGYQPPSGQPGASPPTQHVPGAGTPTTTPPSH--SHPSTPPSPSGPSFHPPPTP 641
Query: 192 RTGSEPQHGLSSDG 233
S P HG S+ G
Sbjct: 642 HNCSPPSHGSSTGG 655
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 6 REDTPPRPATGNHP-PSRLAHXSATIHIRGP 95
R TPP P G+ P P R ++ S + RGP
Sbjct: 42 RRRTPPPPPPGSGPGPQRPSYLSVALRRRGP 72
>01_06_0035 + 25782410-25783384,25784130-25784696
Length = 513
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 138 PEALRGHLHMSHYACGTFRTGSEPQHGLSSDGTP 239
P + H+HM + G FR + HG++ D P
Sbjct: 365 PGRMDMHVHMGYLGFGAFRELAATYHGVAGDDHP 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,739
Number of Sequences: 37544
Number of extensions: 374646
Number of successful extensions: 1493
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -