Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060376.seq
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 51 7e-07
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 45 3e-05
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 45 3e-05
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 30 1.3
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 30 1.3
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 30 1.3
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 30 1.3
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 28 4.0
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 28 4.0
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 28 4.0
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 28 4.0
AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical... 28 4.0
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 27 9.3
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 50.8 bits (116), Expect = 7e-07
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 73 RPFTYVGLDYFGP--YQVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLSTDSAVMALRRM 246
RPF GLDYFGP ++ G ST+ + + +C TTR H+E ST + + A+RR
Sbjct: 901 RPFENTGLDYFGPMTFRKEDG-STESCWGCVLSCATTRLTHIELVQQCSTKAFINAIRRF 959
Query: 247 IARGELRRRYGATTAP 294
++ + R + AP
Sbjct: 960 VSERGIPDRIVSDNAP 975
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +1
Query: 76 PFTYVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLE 195
PF +VGLDY GP + K YV I+TCL TRA LE
Sbjct: 1799 PFQHVGLDYLGPIAYKNKDTHFKAYVLIYTCLVTRAAKLE 1838
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 401 FHGRRWERMVRAVKAALSATEQPRRPNARNISYSASEAEFTVNSRPLT 544
+ G +ER+V VKA + + ++ Y S AE +NSRPLT
Sbjct: 1913 WQGGIYERLVGLVKAQIIKAIGKNILDFHSLRYVLSGAEAMINSRPLT 1960
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 258 GAPTEIWSDNGTNLRGADKELRQALDKATEHEA-----SLKLIQWRFIPPGAPFMGG 413
G P I+SDN +K L + ++ E + K I++R I P AP+ GG
Sbjct: 1860 GVPETIYSDNAQTFLLGEKILSEDVNSDITSETLTSFLATKDIEFRHITPLAPWQGG 1916
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +1
Query: 76 PFTYVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLE 195
PF +VGLDY GP + K YV I+TCL TRA LE
Sbjct: 1799 PFQHVGLDYLGPIAYKNKDTHFKAYVLIYTCLVTRAAKLE 1838
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 401 FHGRRWERMVRAVKAALSATEQPRRPNARNISYSASEAEFTVNSRPLT 544
+ G +ER+V VKA + + ++ Y S AE +NSRPLT
Sbjct: 1913 WQGGIYERLVGLVKAQIIKAIGKNILDFHSLRYVLSGAEAMINSRPLT 1960
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 258 GAPTEIWSDNGTNLRGADKELRQALDKATEHEA-----SLKLIQWRFIPPGAPFMGG 413
G P I+SDN +K L + ++ E + K I++R I P AP+ GG
Sbjct: 1860 GVPETIYSDNAQTFLLGEKILSEDVNSDITSETLTSFLATKDIEFRHITPLAPWQGG 1916
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Frame = +1
Query: 43 THRADWHTHRRPFTYVGLDYFGPYQVTTGRSTQKH--YVAIFTCLTTRA-VHLEPAASLS 213
T + W HR P Y G + PY V G Q H V I R + P +
Sbjct: 1137 TTESSWRQHRNPIPYNG--WQRPYSVDLGELPQGHTYQVRIVAKDPNRGNAYTSPVVQVQ 1194
Query: 214 TDSAVMALRRMIARGELRRRYGATTAPIYGVPTR----SCAKLW 333
T S A RR A ++ G T + P +C +LW
Sbjct: 1195 TQSQCKAPRRAPADVQV-SPLGPTQIRVQWAPLHESEWNCDRLW 1237
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Frame = +1
Query: 43 THRADWHTHRRPFTYVGLDYFGPYQVTTGRSTQKH--YVAIFTCLTTRA-VHLEPAASLS 213
T + W HR P Y G + PY V G Q H V I R + P +
Sbjct: 1137 TTESSWRQHRNPIPYNG--WQRPYSVDLGELPQGHTYQVRIVAKDPNRGNAYTSPVVQVQ 1194
Query: 214 TDSAVMALRRMIARGELRRRYGATTAPIYGVPTR----SCAKLW 333
T S A RR A ++ G T + P +C +LW
Sbjct: 1195 TQSQCKAPRRAPADVQV-SPLGPTQIRVQWAPLHESEWNCDRLW 1237
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Frame = +1
Query: 43 THRADWHTHRRPFTYVGLDYFGPYQVTTGRSTQKH--YVAIFTCLTTRA-VHLEPAASLS 213
T + W HR P Y G + PY V G Q H V I R + P +
Sbjct: 1137 TTESSWRQHRNPIPYNG--WQRPYSVDLGELPQGHTYQVRIVAKDPNRGNAYTSPVVQVQ 1194
Query: 214 TDSAVMALRRMIARGELRRRYGATTAPIYGVPTR----SCAKLW 333
T S A RR A ++ G T + P +C +LW
Sbjct: 1195 TQSQCKAPRRAPADVQV-SPLGPTQIRVQWAPLHESEWNCDRLW 1237
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Frame = +1
Query: 43 THRADWHTHRRPFTYVGLDYFGPYQVTTGRSTQKH--YVAIFTCLTTRA-VHLEPAASLS 213
T + W HR P Y G + PY V G Q H V I R + P +
Sbjct: 1137 TTESSWRQHRNPIPYNG--WQRPYSVDLGELPQGHTYQVRIVAKDPNRGNAYTSPVVQVQ 1194
Query: 214 TDSAVMALRRMIARGELRRRYGATTAPIYGVPTR----SCAKLW 333
T S A RR A ++ G T + P +C +LW
Sbjct: 1195 TQSQCKAPRRAPADVQV-SPLGPTQIRVQWAPLHESEWNCDRLW 1237
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1968 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 1998
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1990 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 2020
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1781 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 1811
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 2088 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 2118
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1968 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 1998
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1990 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 2020
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1781 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 1811
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 2088 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 2118
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1799 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 1829
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 265 RRRYGATTAPIYGVPTRSCAKLW 333
RR+YGA P Y VP S A W
Sbjct: 755 RRQYGAAPPPTYDVPNVSSASDW 777
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 265 RRRYGATTAPIYGVPTRSCAKLW 333
RR+YGA P Y VP S A W
Sbjct: 755 RRQYGAAPPPTYDVPNVSSASDW 777
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HGLSSDGTPAHDRARGAPTEIWSDNGTNLRG 305
H + SDG AHD ++ NGT+LRG
Sbjct: 1759 HEVYSDGAAAHDGRLKPGDQVLEVNGTSLRG 1789
>AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical
protein F52C6.14 protein.
Length = 779
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 288 RCRSISPSELPARDHAPECHHC*VRAEARCRF*MYRTRSETCEDGHVVL 142
RC SI + L H ECH C R C ++ T C+ H VL
Sbjct: 552 RCNSII-NFLKENTHCEECHACAYRCHCDC---LFSTAGVACKHIHGVL 596
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 222 SSDGTPAHDRARGAPTEIWSDNGT 293
S++ TP+H GAP S+NGT
Sbjct: 341 SANSTPSHHIVEGAPLSYSSNNGT 364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,254
Number of Sequences: 27780
Number of extensions: 266624
Number of successful extensions: 944
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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