Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060376.seq
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.40 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.40 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.53 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 132 KHPEALRGHLHMSHYACGTFRTGSEPQHGLSSDGTPAHDRARG-APTEIWSDNGT 293
           K  + ++ HL+++   CG  R  S  +   S D  P + RARG   T+I S  GT
Sbjct: 356 KLKQGIQFHLYINTAPCGDARIFSPHEENESVDKHP-NRRARGQLRTKIESGEGT 409


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 67  HRRPFTYVGLDYFGPYQVTTGRSTQKHYVA 156
           HR+P  Y   D F P      ++  +HY A
Sbjct: 448 HRQPHIYPNPDVFDPDNFLPEKTANRHYYA 477


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 12  DTPPRPATGNHPPSRLAHXSATI 80
           DTPP+PA    PPS     SA +
Sbjct: 336 DTPPKPAPPPPPPSSSGPDSAKL 358


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 111 GPEVIEAHVCEWSPMXVPVCS 49
           GP VI    C+ SP+   VC+
Sbjct: 49  GPNVINPFFCDMSPLLSLVCA 69


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 258 GAPTEIWSDNGTNLRGADKELRQALDKATEHEASLKLIQWRFIPPGAPFMG 410
           GAP EI    GT    A + ++Q          SL ++ W+ +    PF G
Sbjct: 206 GAPNEIDKFYGTPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKLPFAG 256


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
 Frame = +3

Query: 90  GPRLLRALSSYHRQKH--------PEALRGHLHMSH--YACGTFRTGSEPQHGLSSDGTP 239
           G RLL  + S H Q+H           L GH  M    Y   T  T S P  G S   +P
Sbjct: 187 GTRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGSG-SLPASP 245

Query: 240 A 242
           A
Sbjct: 246 A 246


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 487 SGVRAPRLFRGRERGLYRPHH 425
           SG    R  RG+E+  Y P+H
Sbjct: 373 SGRVLMRTVRGKEKTCYYPYH 393


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 487 SGVRAPRLFRGRERGLYRPHH 425
           SG    R  RG+E+  Y P+H
Sbjct: 373 SGRVLMRTVRGKEKTCYYPYH 393


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 195 TGSEPQH-GLSSDGTPA 242
           TGS PQH G S+  +PA
Sbjct: 65  TGSSPQHSGSSASTSPA 81


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 270 EIWSDNGTNLRGADKELRQALDKATEHEASLKLIQWRFIPPGAPFMGGAGRE 425
           E +  + +N       +  ++D+++ HE S      R I P A    G G+E
Sbjct: 41  ESYDASSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDPCASKYCGIGKE 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,397
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)