Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060376.seq
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41180.1 68415.m05086 sigA-binding protein-related low simila...    29   1.6  
At4g12560.1 68417.m01982 F-box family protein contains F-box dom...    28   3.7  
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu...    28   3.7  
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport...    28   3.7  
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu...    28   5.0  
At2g20840.1 68415.m02456 secretory carrier membrane protein (SCA...    28   5.0  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    27   8.7  

>At2g41180.1 68415.m05086 sigA-binding protein-related low
           similarity to SigA binding protein [Arabidopsis
           thaliana] GI:6980074; contains Pfam domain PF05678: VQ
           motif
          Length = 141

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 101 TSGPIKLPPAEAPRSTTWPSSHVSLRVRYI*NRQR 205
           +S P ++PP +  +STT   +H  ++VRYI N  R
Sbjct: 16  SSSPTRIPPKQKRKSTT---THKPIKVRYISNPMR 47


>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 413

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
 Frame = +3

Query: 105 RALSS--YHRQKHPEALRGHLHM-----SHYAC---GTFRTGSEPQHGLSSDGTPAHDRA 254
           RALS   YH    P+ +  HLH       H      G  R  S     L S     H   
Sbjct: 25  RALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVSDVEHPMK 84

Query: 255 RGAPTEIW-SDNG 290
           RG PTE++ S NG
Sbjct: 85  RGGPTEVFGSSNG 97


>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
            putative similar to multidrug resistant P-glycoprotein
            GI:4204793 from [Solanum tuberosum]
          Length = 1230

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 85   YVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLSTDSA 225
            Y    Y G   V  GR+       +F  LT  AV +  A+S + DS+
Sbjct: 903  YASCFYVGARLVKAGRTNFNDVFQVFLALTLTAVGISQASSFAPDSS 949


>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
            putative similar to multidrug-resistant protein CjMDR1
            [Coptis japonica] GI:14715462, MDR-like p-glycoprotein
            [Arabidopsis thaliana] GI:24324262; contains Pfam
            profiles PF00005: ABC transporter, PF00664: ABC
            transporter transmembrane region
          Length = 1286

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 82   TYVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLSTDSA 225
            +Y    Y G   V  G++T      +F  LT  A+ +  ++SLS DS+
Sbjct: 959  SYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQSSSLSPDSS 1006


>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
            putative similar to multidrug-resistant protein CjMDR1
            GI:14715462 from [Coptis japonica]
          Length = 1229

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 85   YVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLSTDSA 225
            Y    Y G   V  GR+       +F  LT  A+ +  A+S + DS+
Sbjct: 902  YASCFYVGARLVKAGRTNFNDVFQVFLALTMTAIGISQASSFAPDSS 948


>At2g20840.1 68415.m02456 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 282

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 237 PAHDRARGAPTEIWSDNGTNLRGADKELRQALDKATEHEASLK 365
           P     RGA  +I  D+G +L+  +KELR+   +    E  +K
Sbjct: 34  PPEPYDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIK 76


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 172 TTRAVHLEPAASLSTDSAVMALRRMIA 252
           T + +  +PA   +TD AVM +RR +A
Sbjct: 14  TVKKIKKDPAFETTTDHAVMGIRRHVA 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,653,574
Number of Sequences: 28952
Number of extensions: 253148
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)