Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060375.seq
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 134 6e-32
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 128 4e-30
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 106 1e-23
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 61 6e-10
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 4e-04
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 36 0.016
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.59
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013) 30 1.4
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 3.1
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 5.5
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063) 27 7.2
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 27 9.6
SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78) 27 9.6
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 27 9.6
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 27 9.6
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 27 9.6
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 134 bits (323), Expect = 6e-32
Identities = 79/151 (52%), Positives = 96/151 (63%), Gaps = 4/151 (2%)
Frame = +1
Query: 76 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 255
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 256 *TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVMEAXLRSR*HIRVK--TKPFSP 423
P + ++ + + K P + ++ V+ R + + K K F P
Sbjct: 61 MNP--ENTVFDAKRLIGRK--FDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFP 116
Query: 424 RKSVPWCLRK*RKTAXAYLGKTVQNAVIRFP 516
+ L K ++TA AYLG V +AV+ P
Sbjct: 117 EEISSMVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 122 bits (293), Expect = 2e-28
Identities = 54/91 (59%), Positives = 65/91 (71%)
Frame = +3
Query: 255 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGXPKIKVAYKGEDKTFFPEEVS 434
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G PKI+V +KGE K+FFPEE+S
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 435 SMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
SMVLTKMKE + + VPAYF+
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFH 151
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 128 bits (308), Expect = 4e-30
Identities = 73/149 (48%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = +1
Query: 76 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 255
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 256 *TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEAXLRSR*HIRVK--TKPFSPRK 429
P + ++ + + + L ++ + + + K K F+ +
Sbjct: 61 LNP--ENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEE 118
Query: 430 SVPWCLRK*RKTAXAYLGKTVQNAVIRFP 516
L K ++TA AYLG+ V +AVI P
Sbjct: 119 ISSMVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 123 bits (296), Expect = 1e-28
Identities = 56/91 (61%), Positives = 67/91 (73%)
Frame = +3
Query: 255 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGXPKIKVAYKGEDKTFFPEEVS 434
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD PKI+V YKGE KTF EE+S
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 435 SMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
SMVL KMKE + Q VPAYFN
Sbjct: 121 SMVLGKMKETAEAYLGQKVTSAVITVPAYFN 151
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 126 bits (304), Expect = 1e-29
Identities = 58/64 (90%), Positives = 60/64 (93%)
Frame = +1
Query: 76 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 255
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 256 *TPT 267
PT
Sbjct: 61 MNPT 64
Score = 101 bits (241), Expect = 5e-22
Identities = 58/116 (50%), Positives = 66/116 (56%), Gaps = 25/116 (21%)
Frame = +3
Query: 255 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGXPKIKVAYKGEDKTFFPEEV- 431
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 432 ------------------------SSMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
SSMVL KMKE + + VPAYFN
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFN 176
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 426 EVSSMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
++SSMVL KMKE + + VPAYFN
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFN 244
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 106 bits (254), Expect = 1e-23
Identities = 68/150 (45%), Positives = 89/150 (59%), Gaps = 9/150 (6%)
Frame = +1
Query: 94 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVA*TPTT 270
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP-- 761
Query: 271 QYSMPNVSSDVSSKMLLCKPT*STGLSR------LSVMEAXLRSR*HIRVK--TKPFSPR 426
N D +K L+ + T + V++ + ++VK K F+
Sbjct: 762 ----ENTVFD--AKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAE 815
Query: 427 KSVPWCLRK*RKTAXAYLGKTVQNAVIRFP 516
+ L K ++TA AYLGK V +AV+ P
Sbjct: 816 EISAMVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/90 (51%), Positives = 59/90 (65%)
Frame = +3
Query: 258 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGXPKIKVAYKGEDKTFFPEEVSS 437
NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV P ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 438 MVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
MVLTKMKE + + VPAYFN
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVPAYFN 849
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 67.7 bits (158), Expect = 6e-12
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 258 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGXPKIKVAYKGEDKTFFPEEVS 434
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 435 SMVLTKMKENCRSLSRQNCAECSYQVPAYF 524
+M+ T++K + +C VP+Y+
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYY 207
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 94 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 249
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +1
Query: 82 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 255
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 256 *TP 264
P
Sbjct: 90 INP 92
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGXPKIKVAYKGEDKTFFPEEV 431
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 432 SSMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
V+ K++ + VPA F+
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPAEFD 181
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 145 GKVEIIANDQGNRTTPSYVAFTDTERLI 228
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 36.3 bits (80), Expect = 0.016
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 381 IKVAYKGEDKTFFPEEVSSMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
I V GE ++F PE++S++VL ++K + + Q VPA+FN
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFN 50
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 63 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 239
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 240 QEPGGMNPNNTIFDA 284
GM+P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 154 EIIANDQGNRTTPSYVAFT-DTERL 225
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 63 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 239
L++ N + ++ R GY L R C R + +R + H++L R +RC
Sbjct: 661 LRLVNTRDDKTHGKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTDTETRFCEKRCA 718
Query: 240 QEPGGMNPNNTIFDA 284
GM+P N F+A
Sbjct: 719 GTASGMDPKNIPFNA 733
>SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)
Length = 119
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +3
Query: 285 KRLIGRKFEDATVQADMKHWPFEVVSDGGXPKIKVAYKGEDKTFFPEEVSSMVLTKMKEN 464
K ++G + E A + + WPF+V K + K P + +++ +TKM+EN
Sbjct: 42 KLVLGER-ERAIQELSQQQWPFDVQDPALESTSKDLKETPIKETSPVQAATLNMTKMEEN 100
Query: 465 CRSLS 479
+ LS
Sbjct: 101 QQELS 105
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 22 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 108
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 490 QFCRDKLRQFSFIFVSTMELTSSGKKVLSSPL 395
Q C +++R+ F ST ++ + +K+L PL
Sbjct: 895 QMCENRIRKLQFPETSTSQIDKTNRKILGCPL 926
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 104 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 247
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 104 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 247
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1
Query: 457 FIFVSTMELTSSGKKVLSSPLYATLILGXPPSLTTSKGQCFMSACTVASSNLRPMRRLAS 278
F+F ST + +S +KV+ SPL + + P+ G S C V NL ++++
Sbjct: 1112 FVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCPKISN 1169
Query: 277 NIVL 266
VL
Sbjct: 1170 ATVL 1173
>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
Length = 683
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 264 WGSCHLVLGGISDETLGVCERNIRRSGPVALVV 166
WG CH V G ET G + + R+ G + V
Sbjct: 190 WGGCHFVPGMPKAETRGYWDESERKPGVIGTKV 222
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 422 RGSQFHGAYENEGKLPXLISAKLCRMQ 502
RG+ F +EN G++ I +K+CR Q
Sbjct: 78 RGNVFTAKFENLGRIIGAIKSKVCRPQ 104
>SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)
Length = 355
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 203 RSQTPSVSSEMPPRTRWHEPQQHNIRCQTS 292
+ Q P++ P+++ P QHN RC+++
Sbjct: 75 KKQLPTLMKWFSPKSKDETPTQHNQRCESN 104
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 138 PAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPGGMN 260
P R DH R ++ RH A +R +EPGG++
Sbjct: 942 PDRHPHDHPDRLTHDRPGLIMGQDRHMADYREPHREPGGVH 982
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 375 PKIKVAYKGEDKTFFPEEVSSMVLTKMKENCRSLSRQNCAECSYQVPAYFN 527
P +K Y+ D TF PEE+ M+L + + + VP +FN
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFN 117
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 203 RSQTPSVSSEMPPRTRWHEPQQHNIRCQTS 292
+ Q P++ P+++ P QHN RC+++
Sbjct: 221 KKQLPTLMKWFSPKSKDETPTQHNQRCESN 250
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 138 PAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPGGMN 260
P R DH R ++ RH A +R +EPGG++
Sbjct: 75 PDRHPHDHPDRLTHDRPGLIMGQDRHMADYREPHREPGGVH 115
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 27.1 bits (57), Expect = 9.6
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = +2
Query: 47 QVTRLIKNTKWQKHPQ*ESIWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVS 226
Q R IK +K Q H Q PR + G+ +SP T++T P R S S
Sbjct: 257 QAGRKIKISKPQNHKQ-----APRPRQASPKTKGQ--ASPKTKSTKPARPRQASPKAKTS 309
Query: 227 SEMPPRTRWHEPQQHNIRCQTS 292
+ P+Q +++ +TS
Sbjct: 310 KPQDQDKQVARPRQSSLKTKTS 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,532,909
Number of Sequences: 59808
Number of extensions: 425783
Number of successful extensions: 1334
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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