BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060375.seq (529 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein p... 27 0.51 AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein. 24 2.7 AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T... 24 3.6 AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T... 24 3.6 AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein pr... 23 4.8 AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote... 23 6.3 >AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein protein. Length = 499 Score = 26.6 bits (56), Expect = 0.51 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +3 Query: 189 SVLCCVHRHRASHRRCRQEPGGMNPNNTI 275 SVL C + R C P GMN N ++ Sbjct: 10 SVLGCAYTQRTKCAACLDSPDGMNGNESL 38 >AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein. Length = 3361 Score = 24.2 bits (50), Expect = 2.7 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +3 Query: 75 NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 176 +GK RS + +++LL P REG H+ Q PG Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837 >AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr phosphatase protein. Length = 1977 Score = 23.8 bits (49), Expect = 3.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +3 Query: 456 KENCRSLSRQNCAECS 503 K +CRS + CAECS Sbjct: 1824 KHHCRSCGQIFCAECS 1839 >AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr phosphatase protein. Length = 1978 Score = 23.8 bits (49), Expect = 3.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +3 Query: 456 KENCRSLSRQNCAECS 503 K +CRS + CAECS Sbjct: 1825 KHHCRSCGQIFCAECS 1840 >AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein protein. Length = 476 Score = 23.4 bits (48), Expect = 4.8 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Frame = +2 Query: 98 ESIWVPRTLALVSSSTGRWRSSPT-TRATGPLRLMLRSQTPSVSSEMPPRTRWHEPQQHN 274 E++W + A S T W+ RAT L L+ Q P + + W Q+H+ Sbjct: 30 ENLWKFESTAAPESLTETWKEGDAKARATIAL-LVDDCQHPLIRDCKTAKGTWDALQKHH 88 Query: 275 IRCQTSHRT*VRRCYCASRHE 337 + S + + + C + ++ Sbjct: 89 QKTTMSTKVSLLKKLCKAEYD 109 >AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein protein. Length = 1645 Score = 23.0 bits (47), Expect = 6.3 Identities = 9/37 (24%), Positives = 18/37 (48%) Frame = +2 Query: 173 RATGPLRLMLRSQTPSVSSEMPPRTRWHEPQQHNIRC 283 + G L + S + +VSS++PP + ++ C Sbjct: 744 KVAGTLGAVQPSSSEAVSSKLPPTAEPEHSESSDVEC 780 Score = 22.6 bits (46), Expect = 8.4 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = -3 Query: 125 QEYVVPRSIPTAGAFA 78 Q+Y PR++ +AG FA Sbjct: 1244 QDYAPPRALMSAGGFA 1259 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 615,243 Number of Sequences: 2352 Number of extensions: 13946 Number of successful extensions: 39 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 39 length of database: 563,979 effective HSP length: 60 effective length of database: 422,859 effective search space used: 48628785 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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