Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060375.seq
         (529 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    27   0.51 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   2.7  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   3.6  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   3.6  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   4.8  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   6.3  

>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 189 SVLCCVHRHRASHRRCRQEPGGMNPNNTI 275
           SVL C +  R     C   P GMN N ++
Sbjct: 10  SVLGCAYTQRTKCAACLDSPDGMNGNESL 38


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 75   NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 176
            +GK  RS +   +++LL    P REG  H+  Q PG
Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 456  KENCRSLSRQNCAECS 503
            K +CRS  +  CAECS
Sbjct: 1824 KHHCRSCGQIFCAECS 1839


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 456  KENCRSLSRQNCAECS 503
            K +CRS  +  CAECS
Sbjct: 1825 KHHCRSCGQIFCAECS 1840


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 98  ESIWVPRTLALVSSSTGRWRSSPT-TRATGPLRLMLRSQTPSVSSEMPPRTRWHEPQQHN 274
           E++W   + A   S T  W+      RAT  L L+   Q P +      +  W   Q+H+
Sbjct: 30  ENLWKFESTAAPESLTETWKEGDAKARATIAL-LVDDCQHPLIRDCKTAKGTWDALQKHH 88

Query: 275 IRCQTSHRT*VRRCYCASRHE 337
            +   S +  + +  C + ++
Sbjct: 89  QKTTMSTKVSLLKKLCKAEYD 109


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 173 RATGPLRLMLRSQTPSVSSEMPPRTRWHEPQQHNIRC 283
           +  G L  +  S + +VSS++PP       +  ++ C
Sbjct: 744 KVAGTLGAVQPSSSEAVSSKLPPTAEPEHSESSDVEC 780



 Score = 22.6 bits (46), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 125  QEYVVPRSIPTAGAFA 78
            Q+Y  PR++ +AG FA
Sbjct: 1244 QDYAPPRALMSAGGFA 1259


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,243
Number of Sequences: 2352
Number of extensions: 13946
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)