Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060374.seq
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.46 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   1.4  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   3.2  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   3.2  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   4.2  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   4.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   4.2  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   4.2  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   5.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   7.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   7.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   7.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   9.8  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   9.8  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 339 KESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 464
           K SPP  N+  A+KPVP+  N   S +L   +SP  N K ++
Sbjct: 188 KNSPP--NSRTARKPVPRRAN-SASHNLGSTKSPNGNAKESL 226


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 306  TSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPS 413
            TSA S+   I K S P  NN +    VP    P P+
Sbjct: 1068 TSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPPA 1103


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 309 SADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS 425
           S+DS++ +  +E+   + +  A K +PK   P PS DL+
Sbjct: 156 SSDSSSDV-DEETLIVSKSKKAHKDIPKFSAPPPSADLN 193


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 449 ILGRRLKKG*VNRRLGILSFWYWFFGCSIVVGRWRLFL 336
           IL RR++   +   L ILSF  W F   +V   WRLF+
Sbjct: 2   ILNRRIQV--ILPTLLILSFIIWIFHSVMVDKDWRLFM 37


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 152 MDEELNDHDLEGRLYAMLHYADETQTKKNENNQNELRLS 268
           + EE ND  LE +LY    Y D+  T + EN + +  L+
Sbjct: 270 LKEEKND--LESKLYRFEEYRDKVATLELENEKIQTELN 306


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 492 VFQFHARLPQWFFLNFGAEIEKRISQQK 409
           VFQ H RL + F L   AE+EK +++++
Sbjct: 286 VFQAHDRLLEVFRLRSSAELEKILNRRR 313


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -1

Query: 392  FWYWFFGCSIVVGRWRLFL--NYFSVGIGTGAP--ITTNSL 282
            F  WFFGC+++ G  +LFL  N   + + T A   ITT+S+
Sbjct: 1950 FMCWFFGCTLISGP-QLFLKNNLKPLLLATHASHLITTSSI 1989


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 156 TRNLTIMIWRAGCMLCCIMQTKHRPRKTKITKMSS 260
           TR +    W  G  LC    T HR   T ++K+ S
Sbjct: 28  TRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKS 62


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 266 SKMPRADCSSLLAHQCRFQH*NNSERVATCQQQ--YCSQKTST 388
           S +  ++ +SLL  Q  F+  N+ +RVA  ++Q  YC Q+  T
Sbjct: 523 SPINESESNSLLKLQSDFKFSNSDDRVAWLEEQLLYCMQQGYT 565


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/99 (19%), Positives = 44/99 (44%)
 Frame = +3

Query: 219 KHRPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAE 398
           ++  R T+ T +  +       T+R +++     N   ++ ++       + + P  + E
Sbjct: 216 RNTARLTRETALKPEVVVKKKVTLREFFQKIGFKNDNQLENKAISEEEANSTEPPNVEKE 275

Query: 399 NPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILESAM 515
            P+PSVD S      +++K  + V +  +E + I   A+
Sbjct: 276 EPKPSVDRSTGIVNSEDIKE-LSVEDDSLELKEITPEAL 313


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 336 QKESPPANNNTAAKKPVPKAENPQPSVDL-SFFQSPPQNLKRTI 464
           ++ + P    ++ + P P AEN QPSV      +SP  +L + I
Sbjct: 321 KEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVI 364


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 387 PKAENPQPSVDLSFFQSPPQNL 452
           P+ + PQP++ L+ + +PP++L
Sbjct: 500 PEGDLPQPNIYLTRYTNPPKSL 521


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 19/85 (22%), Positives = 35/85 (41%)
 Frame = +3

Query: 153 WTRNLTIMIWRAGCMLCCIMQTKHRPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKI 332
           W +   +  W  G +L   M ++H   + K  +   +  K P  T   +     ++N   
Sbjct: 356 WLKECDVT-WLYGPLLHTSMPSRHHSHRKK--EKEKEKSKAPRVTPLTHKTNDDEAN--- 409

Query: 333 IQKESPPANNNTAAKKPVPKAENPQ 407
               S  ++ ++ AKKP+ K   PQ
Sbjct: 410 ---HSETSSGSSLAKKPILKRRTPQ 431


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 152 MDEELNDHDLEGRLYAMLHYADETQTKKNENNQNELRLSKMP 277
           MDEE +D D E    AM     +++   +EN+   +   + P
Sbjct: 739 MDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKP 780


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +3

Query: 327 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 467
           K+    + P N N   K P  +  N  P +  ++  SP  +++   E
Sbjct: 174 KLTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSIQEAEE 220


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 306 TSADSNTKIIQKESPPANNNTAAKKPVP--KAENPQPSVDLSFFQSPPQN 449
           +  ++N + ++  +   ++NT + +  P  KAE P+ + + S   S P N
Sbjct: 16  SDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTN 65


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 306 TSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 440
           +S   +T  +  E PP    T A + VP+ +  QPS+ L   +SP
Sbjct: 111 SSTFESTPPVFSEYPPNIIPTPANETVPRIK--QPSIALDSLESP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,841
Number of Sequences: 5004
Number of extensions: 46617
Number of successful extensions: 200
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)