Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060374.seq
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 33 0.11
04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542 33 0.15
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 32 0.35
12_02_0057 + 13006980-13006985,13007066-13007542 30 1.1
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 29 1.9
08_02_0369 - 16324765-16326248,16326339-16326351 29 2.5
02_03_0402 - 18627565-18628137,18628343-18628479,18628513-186286... 29 2.5
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 4.3
06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253 28 4.3
01_07_0276 - 42435975-42436301 28 4.3
09_06_0316 + 22262652-22263872 28 5.7
01_06_0568 + 30305008-30305170,30305277-30305341,30306599-303067... 28 5.7
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 27 7.5
04_01_0410 - 5411135-5411581 27 7.5
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 27 10.0
12_02_0396 + 18577574-18578056,18578094-18578723 27 10.0
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930... 27 10.0
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537... 27 10.0
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 27 10.0
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 27 10.0
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 27 10.0
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 324 TKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVI 473
TK IQK P T A+ P+P+A P+ S+ ++ Q+P L + I
Sbjct: 147 TKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAI 196
>04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542
Length = 245
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 228 PRKTKITKMSSDYRKCPAQTVR-RYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 404
P+K + K ++ + R RYW+T S+T + E P + A P ENP
Sbjct: 21 PKKDSLVKFMQNFLEKETTMPRNRYWKTPVKSSTPAKKLEEPAQRKPSPAPSPPETVENP 80
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 327 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILE 506
+++ E PPAN+ + P+ + PQ ++L+ +S NL T +H E+Q+ +E
Sbjct: 454 EVVTNEEPPANDKPKRGRGRPRKQKPQDGLELTEKKS-TSNLS-TDNAYDHPAERQMDME 511
>12_02_0057 + 13006980-13006985,13007066-13007542
Length = 160
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +3
Query: 225 RPRKTKITKMSSDYRKCPAQ--TVRRYWRTSA-DSNTKIIQKESPPANNNTAAKKPVPKA 395
+P K + ++D R+ P RR RTS+ DS +P AA V
Sbjct: 55 KPAPKKARRRAADNRQKPVGGGNKRRPARTSSSDSGAATAASNTPAKLQQAAATAKVAVV 114
Query: 396 ENPQPSVDLSFFQSPP 443
P P+VD +Q PP
Sbjct: 115 RRP-PAVDADLYQVPP 129
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +3
Query: 294 RYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 467
RYWRT S + E P ++A KP + N S ++ + + K IE
Sbjct: 529 RYWRTPVKSPVPAKKLEQPAQKKPSSAPKPKKERTNMDASKRAAYVKKIHEKTKEEIE 586
>08_02_0369 - 16324765-16326248,16326339-16326351
Length = 498
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 359 VGRWRLFLNYFSVGIG-TGAPITTNSLRGAFSII 261
VGRWR + Y+ VG+ P+ S GA SI+
Sbjct: 301 VGRWRTAMEYYFVGVKFKRRPLNRRSKGGALSIL 334
>02_03_0402 -
18627565-18628137,18628343-18628479,18628513-18628603,
18629734-18629817
Length = 294
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +3
Query: 162 NLTIMIWRAGCMLCCIMQTKHRPRKTKITKMSSDYR---KCPAQTVR-----RYWRTSAD 317
NLT++ R LCC+++ + R+ K+ ++ + R C +T++ R W
Sbjct: 85 NLTVVCVREEAKLCCLLRNRGLGRQRKLRELIFEQRIDMICLQETIKGLGFLRRWLRGWS 144
Query: 318 SNTKIIQKE 344
+N +QK+
Sbjct: 145 ANVNSVQKK 153
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 345 SPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 464
SPP A K+PVP P+ + S + PP RT+
Sbjct: 101 SPPPLGEVAPKQPVPAKLFDAPAAEASSSEPPPPPPPRTL 140
>06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253
Length = 200
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 270 KCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAE 398
K P +T+ Y+ + +++NT PP NN A++ P+AE
Sbjct: 33 KMPKRTLLTYYSSLSNTNTS-----DPPLNNEIASQSKRPRAE 70
>01_07_0276 - 42435975-42436301
Length = 108
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 256 LILVIFVFLGLCFVCI 209
L+L +FVFL +CF CI
Sbjct: 64 LVLSVFVFLSVCFCCI 79
>09_06_0316 + 22262652-22263872
Length = 406
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 210 MQTKHRPRKTKITKMSSDYRKCPAQTVRRYWRTS-----ADSNTKIIQKESPPANNNTAA 374
M+T PR T+I + ++ C R +W+T+ A + T + P N +
Sbjct: 1 METLPAPRPTQIPRSTAIRPPCATPFSRAHWQTTCAAILATTTTTNAKAYGAPRVNGDSI 60
Query: 375 KKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIE 476
K + +++ P +DL P NL R + + +
Sbjct: 61 KPAL--SDHAAPPLDLDLL--PVSNLPRPLTITD 90
>01_06_0568 +
30305008-30305170,30305277-30305341,30306599-30306769,
30307409-30307978,30308085-30308444,30308496-30308774
Length = 535
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 180 WRAGCMLCCIMQTKHRPRKTKITKMSSDYRKCPAQTVRRYWRTSA 314
WR G + +M+T ++ + S +Y +C A VR Y R A
Sbjct: 266 WRDGGAIASVMRTIE-----EVQRSSMEYHQCDASVVREYRRLEA 305
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 282 QTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPS 413
Q++ + + NT I SPP+ A P P P PS
Sbjct: 122 QSIPNFKKDGNPFNTSIAPSASPPSTPGGPAPTPTPTRPAPSPS 165
>04_01_0410 - 5411135-5411581
Length = 148
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 207 IMQTKHRPRKT-KITKMSSDYRKCPAQTVR-RYWRTSADSNTKIIQKESPPANNNTAAKK 380
I + + +P KT + K ++ + R RYWRTS S + E P ++A+K
Sbjct: 64 IQEVEVKPPKTDSLVKFMHNFLEKETTMPRNRYWRTSVKSPIPAKKSEQPAQKKPSSAQK 123
Query: 381 PV----PKAENPQPS 413
K + P PS
Sbjct: 124 SKKVCRKKPKTPAPS 138
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 267 RKCPAQTVRRYWRT-SADSNTKIIQK 341
RK QT+ YWR +D NT +QK
Sbjct: 203 RKFALQTIAHYWRQWKSDMNTHYVQK 228
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 27.1 bits (57), Expect = 10.0
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Frame = +3
Query: 207 IMQTKHRPRKTK--ITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKK 380
I K P KT + M + K RYWRT +T + E P +A K
Sbjct: 286 IQVVKVEPPKTDSLVRFMQNFLEKETTMPRNRYWRTPVKPSTPAKKLEQPAQRKPPSAPK 345
Query: 381 P----VPKAENPQPS 413
P K + P PS
Sbjct: 346 PKKVWKEKPKTPAPS 360
>11_04_0162 +
14291835-14292281,14292330-14292697,14292836-14293050,
14293090-14294129
Length = 689
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 PRKTKITKMSSDYRKCPAQTVR-RYWRTSADSNTKIIQKESPPANNNTAAKKP 383
P+K + K ++ + R RYW+T S + E P ++A KP
Sbjct: 613 PKKDSLVKFMQNFLEKETMMPRNRYWKTPVKSPVPAKKLEQPAQKKLSSAPKP 665
>07_01_0711 +
5374717-5374992,5375022-5375277,5375317-5375384,
5375556-5376287,5377013-5377270
Length = 529
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 294 RYWRTSADSNTKIIQKESPPANNNTAAKKP 383
RYW+T S+T + E P ++A KP
Sbjct: 413 RYWKTPVKSSTPAKKLEQPAQRKPSSAPKP 442
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 312 ADSNTKIIQKESPPANNNTA-AKKPVPKAENPQPSVDLSFFQSPPQ 446
A+S + +K +PP + AKK PK E P+P V+ S + P+
Sbjct: 233 AESVPPVQKKAAPPKESKAKEAKKEAPK-EAPKPKVEASEEEEAPK 277
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/82 (24%), Positives = 32/82 (39%)
Frame = +3
Query: 195 MLCCIMQTKHRPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAA 374
M C +R + + SS A T R+ R S + ++K A+ +
Sbjct: 271 MRCANSSDSNRQEQETVPARSSSSGSGAAATDRKK-RKSEERQESTVKKSKQEASKASPP 329
Query: 375 KKPVPKAENPQPSVDLSFFQSP 440
K+PVPK + + L SP
Sbjct: 330 KQPVPKVKLGEKITALQQIVSP 351
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 198 LCCIMQT-KHRPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTA 371
+ C+ +T + RP+ + + +M D R+ T RTS +++T ++ ++ +++ A
Sbjct: 621 MACVSRTPERRPKMSDVVRMLEDVRRTDTGT-----RTSTEASTPVVDVQNKAESSSAA 674
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,053
Number of Sequences: 37544
Number of extensions: 297363
Number of successful extensions: 999
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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