Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060374.seq
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    35   0.038
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  30   1.4  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   2.5  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   29   2.5  
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 29   2.5  
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   3.3  
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)          28   4.4  
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            28   5.8  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              27   7.7  

>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
 Frame = +3

Query: 207  IMQTKHRPRKTKITKMSSDYR-------KCPAQTVRRYWRTSADSNTKIIQKESPPANNN 365
            I +TK +PRK +IT  ++  R       K PA  V  +   S     +  ++ SP     
Sbjct: 1306 IYETKEQPRKVEITSTTNTNREETIHEDKRPAAKVFDFRSQSPLVGEREEKQPSPQITRK 1365

Query: 366  TAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILES 509
               + P  +A++P+        + P     R     +H  EKQ+++ES
Sbjct: 1366 IVQEAPSERAQSPRDYRHSEEKRGPSPRNMRAASPRDHTTEKQIVVES 1413


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 258 SDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQS 437
           SD R+C    + R  R +A S  ++ ++    +   TAA  P   A +P P+  LS    
Sbjct: 649 SDSRECHTDNIPRKKRAAAISAAQLQKRARSLSLPCTAASSPSTPASSPSPTPPLS-NSL 707

Query: 438 PPQNL 452
           PP  L
Sbjct: 708 PPSTL 712


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 225  RPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 404
            R  +T +    ++ +K  A+ V+     S   NT+ + +  P +N  +AAK+P+   E+ 
Sbjct: 1798 RSLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGVHRRGP-SNTPSAAKRPIKMTEDA 1856

Query: 405  QPSVDLS 425
             P+   S
Sbjct: 1857 FPTTGTS 1863


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 225 RPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 404
           R  +T +    ++ +K  A+ V+     S   NT+ + +  P +N  +AAK+P+   E+ 
Sbjct: 669 RSLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGVHRRGP-SNTPSAAKRPIKMTEDA 727

Query: 405 QPSVDLS 425
            P+   S
Sbjct: 728 FPTTGTS 734


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 315 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD--LSFFQSPPQNLKRTIEVIEHEIE 488
           ++ T   + E+P        + P+ +AE+P   V+  +   ++P + ++ T+E +E  +E
Sbjct: 2   EARTPAEETEAPVEEAEALGETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPME 61

Query: 489 K 491
           +
Sbjct: 62  E 62


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 510 LIPGSPVFQFHARLPQWFFLNFGAEIEKRISQQK 409
           L P   +    ARLP WF+ + G++  +R+ + K
Sbjct: 93  LPPRKSIHSILARLPPWFYFDVGSDQNRRVVRAK 126


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 225  RPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 404
            R  +T +    ++ +K  A+ V+     S   NT+ + +  P +N  +AAK+P+   E+ 
Sbjct: 941  RSLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGVHRRRP-SNTPSAAKRPIKMTEDA 999

Query: 405  QPSVDLS 425
             P+   S
Sbjct: 1000 FPTTGTS 1006


>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1123

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +3

Query: 348 PPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNL----KRTIEVIEHEIEKQVILESAM 515
           P + N     KP     N + ++DL +       L    K+ +  I H++E+ ++ +  M
Sbjct: 113 PESENPEPTSKPDFTQTNAKWTIDLVYLAKGKGELNMFTKKRLRAI-HKLEQNIMRQEGM 171

Query: 516 RMRLWKWLY 542
           +   WKW Y
Sbjct: 172 QDFCWKWNY 180


>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/83 (22%), Positives = 40/83 (48%)
 Frame = +3

Query: 207 IMQTKHRPRKTKITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPV 386
           I + + R     + + ++D R     T R+       S++ + +  SPP +++  A+KP 
Sbjct: 158 IRREEGRHAAPSLNEPTADNRAQNRDTPRQAPAAKTHSSSTVPRSGSPPVSSSRPAQKPT 217

Query: 387 PKAENPQPSVDLSFFQSPPQNLK 455
             ++   PS ++S   S P++ K
Sbjct: 218 --SQTALPSTEISGTGSLPKSTK 238


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 342 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 446
           ESPP++ +     P   +  P+PS   S   +PPQ
Sbjct: 737 ESPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQ 771


>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
          Length = 779

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 330 IIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 446
           ++ K SPPA  NT+ +K V   E+ +  + ++  Q  PQ
Sbjct: 28  LLPKRSPPAIENTSPQKRVRLCEHDRNFIHVNLIQILPQ 66


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 179 LEGRLYAMLHYADETQTKKNENNQNELRLSKMPRADCS---SLLAHQCRFQH*NNSERVA 349
           ++ R  A  + A +T  K  E N   L       ADCS    LLA QCR     N ER++
Sbjct: 44  VDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAKQCRIYELRNKERIS 103


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 315  DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS-----FFQSPPQNLKRTIEVIEH 479
            +++  +++ +S    +N     P+     P PSVD+S      F +PPQ+L      + H
Sbjct: 1397 NTHPALVRADSSEEPSNAPKHSPLGSRHQPPPSVDMSQPPPPAFAAPPQHLPHLGGAVTH 1456


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 372 AKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE-VIEHEIEKQV 497
           A+K  P+AE          +Q+P Q  +R +E  I+H +EK +
Sbjct: 516 ARKCEPQAEKIYEPQSKKIYQAPEQKTQRLLEKQIQHPVEKAI 558


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 270 KCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVP 389
           K    TV++    S   NTK   K   P+  N+  K P+P
Sbjct: 15  KSSIPTVKKQREQSTTRNTKTTAKSGIPSPGNSIKKSPIP 54


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 261  DYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 440
            DY     + VRR  R +  +N     K  P   ++   +K  P +  P    DLS FQ  
Sbjct: 1112 DYVDEEGRRVRRLVRRTVVTNETFTSKSVPAKADSMPVQKLQPFSIQPVKKSDLSTFQIT 1171

Query: 441  P 443
            P
Sbjct: 1172 P 1172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,661,593
Number of Sequences: 59808
Number of extensions: 353468
Number of successful extensions: 1023
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)