Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060374.seq
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    31   0.42 
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    29   2.2  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    29   2.2  
AF000299-7|AAC47982.1|  168|Caenorhabditis elegans Hypothetical ...    29   2.2  
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    29   2.9  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   2.9  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   2.9  
Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U10401-1|AAA19058.1|  131|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF099915-7|AAU05581.1|  468|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF099915-6|AAU05582.1|  471|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z92847-3|CAB07422.2|  323|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    27   9.0  

>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 309 SADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIE 488
           S +  T ++    PP ++ T   +      +  P++D+SFF +PP+ ++   + +     
Sbjct: 171 SLNLETLVLPPTKPPGDDVTTGSRGFLTPTHSTPALDMSFF-TPPRQMRTLADAVREAAP 229

Query: 489 KQVILE 506
            +VI E
Sbjct: 230 VEVIPE 235


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/81 (20%), Positives = 37/81 (45%)
 Frame = +3

Query: 240 KITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD 419
           K+  +S       + +VR+    S++   K+ + E PP      +  P PK ENP  ++ 
Sbjct: 510 KMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVSTTPNPKNENPLLAMQ 569

Query: 420 LSFFQSPPQNLKRTIEVIEHE 482
             + ++ P   ++   + +H+
Sbjct: 570 KMWAETEPPPPRQMPVLSKHQ 590


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/81 (20%), Positives = 37/81 (45%)
 Frame = +3

Query: 240 KITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD 419
           K+  +S       + +VR+    S++   K+ + E PP      +  P PK ENP  ++ 
Sbjct: 481 KMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVSTTPNPKNENPLLAMQ 540

Query: 420 LSFFQSPPQNLKRTIEVIEHE 482
             + ++ P   ++   + +H+
Sbjct: 541 KMWAETEPPPPRQMPVLSKHQ 561


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/81 (20%), Positives = 37/81 (45%)
 Frame = +3

Query: 240 KITKMSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD 419
           K+  +S       + +VR+    S++   K+ + E PP      +  P PK ENP  ++ 
Sbjct: 510 KMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVSTTPNPKNENPLLAMQ 569

Query: 420 LSFFQSPPQNLKRTIEVIEHE 482
             + ++ P   ++   + +H+
Sbjct: 570 KMWAETEPPPPRQMPVLSKHQ 590


>AF000299-7|AAC47982.1|  168|Caenorhabditis elegans Hypothetical
           protein E03H12.7 protein.
          Length = 168

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +3

Query: 342 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQ 494
           +SP  + + AA KPV +++ P P      F+ P ++ K+  ++ E+E++K+
Sbjct: 84  KSPAPDGDAAAAKPVDQSQKPFPK-----FEMPTESKKKK-KMAENEVDKK 128


>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical protein
            C34E10.8 protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 306  TSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRT 461
            T++ S+ + +  E PPA  ++    PVP  E  +  +D    ++P  + KRT
Sbjct: 875  TTSSSSAETVSGE-PPAKKSSDVSAPVPSPEKEKEKIDRP--KTPKSSTKRT 923


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 245  NQNELRLSKMPRADCSSLLAHQCRFQH*NNSERVATC 355
            +++E  + K+P   C  L+ ++C   H NN    ATC
Sbjct: 1104 SKDESPVPKLPGRSCKGLV-NECNIPHLNNCSHFATC 1139


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 245  NQNELRLSKMPRADCSSLLAHQCRFQH*NNSERVATC 355
            +++E  + K+P   C  L+ ++C   H NN    ATC
Sbjct: 1104 SKDESPVPKLPGRSCKGLV-NECNIPHLNNCSHFATC 1139


>Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 318 SNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS 425
           S+  II+KE PP      A KPV K   P+P V +S
Sbjct: 367 SDDTIIEKEGPP-----PAPKPVSKPVPPKPGVTMS 397


>Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 318 SNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS 425
           S+  II+KE PP      A KPV K   P+P V +S
Sbjct: 367 SDDTIIEKEGPP-----PAPKPVSKPVPPKPGVTMS 397


>Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical
           protein F07A5.2 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 309 SADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 440
           S  S+ K I K+SP     + ++K +PK E+  P    +  ++P
Sbjct: 127 SPGSSRKSILKKSPMKKRRSLSRKSLPKKEHIPPVQKFAIIKNP 170


>U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical
           protein W08A12.3 protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 165 LTIMIWRAGCMLCCIMQTKHRPRKTKITKMSSDY 266
           L I+I    C+  C     HR +K  + K+  DY
Sbjct: 22  LAILIVICNCVSTCCEMLSHRRKKRNVEKLPEDY 55


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 309 SADSNTKIIQK-ESPPANNNTAAKKPVPKAENPQPSV 416
           S D N  ++    S P + +T A + VPK EN +P+V
Sbjct: 568 SIDQNAAVVSNGSSTPFSVSTHADQIVPKIENKRPAV 604


>U10401-1|AAA19058.1|  131|Caenorhabditis elegans Hypothetical
           protein T20B12.5 protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 423 SFFQSPPQNLKRTIEVIEHEIEKQVILESAMRMRLWKWLY 542
           + F S  +  + T +   + +   VI+   +R+ +WKWLY
Sbjct: 90  NIFNSKLEKYECTFKYYSNPLLVNVIILFGLRISVWKWLY 129


>AF099915-7|AAU05581.1|  468|Caenorhabditis elegans Hypothetical
           protein E02H9.3a protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 336 QKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQN 449
           QK+  PANNN  A    PK    +  +  + FQ P ++
Sbjct: 263 QKQVTPANNNKVAGSGFPKPPKKEEKIVGTGFQPPKKD 300


>AF099915-6|AAU05582.1|  471|Caenorhabditis elegans Hypothetical
           protein E02H9.3b protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 336 QKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQN 449
           QK+  PANNN  A    PK    +  +  + FQ P ++
Sbjct: 266 QKQVTPANNNKVAGSGFPKPPKKEEKIVGTGFQPPKKD 303


>Z92847-3|CAB07422.2|  323|Caenorhabditis elegans Hypothetical
           protein H01G02.2 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 177 IWRAGCMLCCIMQTKHR-PRKTKITKMSSDYRKC--PAQTVRRYWRTSADSNTKIIQKES 347
           IW  GC+L  +++ K   P ++++ ++S  +     P +     WRT  D+N K++ +  
Sbjct: 188 IWAIGCILAELVRGKPIFPGRSELEQISIIFGVLGTPNEDNWPNWRTMPDAN-KLLFEPK 246

Query: 348 PPANNNT 368
            P NN T
Sbjct: 247 EPRNNWT 253


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
            protein Y59A8B.1a protein.
          Length = 1641

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 306  TSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEI 485
            +S+ S +K   K  P    +TAA   +    NP  + D  +++   + +K  I    H++
Sbjct: 1477 SSSSSKSKKSAKSDPTFVKSTAAVGVLQGIRNPDANDDDEYYEDERKAVKEVIVFDAHDL 1536

Query: 486  EK 491
             K
Sbjct: 1537 HK 1538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,184
Number of Sequences: 27780
Number of extensions: 275002
Number of successful extensions: 1107
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)