BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060374.seq (551 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 31 0.68 At5g03480.1 68418.m00304 expressed protein ; expression support... 30 0.89 At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 3.6 At2g31820.1 68415.m03886 ankyrin repeat family protein contains ... 28 3.6 At1g42460.1 68414.m04896 Ulp1 protease family protein contains P... 28 3.6 At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 28 3.6 At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 4.8 At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 28 4.8 At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 6.3 At2g40475.1 68415.m04995 expressed protein 27 6.3 At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 27 6.3 At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 8.3 >At5g49530.1 68418.m06130 SIN-like family protein low similarity to Sex-lethal interactor [Drosophila melanogaster] GI:6049274; contains Pfam profile PF04801: Sin-like protein conserved region Length = 689 Score = 30.7 bits (66), Expect = 0.68 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +3 Query: 315 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQ 494 D K + K A KP PK P+P+ D Q PPQ+ ++ EH+++ + Sbjct: 6 DDKPKEVTKTRRFAPGRAGKSKPKPK---PEPTADKPV-QPPPQSQTESVSKTEHDVDAK 61 Query: 495 VI 500 + Sbjct: 62 FV 63 >At5g03480.1 68418.m00304 expressed protein ; expression supported by MPSS Length = 321 Score = 30.3 bits (65), Expect = 0.89 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Frame = +3 Query: 216 TKHRPRKTKITKM--SSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVP 389 TKH +IT++ D++K ++V W + K +Q T KP P Sbjct: 45 TKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPKP 104 Query: 390 KAENPQPSVDLS 425 K E P P +S Sbjct: 105 KHEPPSPITTIS 116 >At3g16730.1 68416.m02136 expressed protein ; expression supported by MPSS Length = 695 Score = 28.3 bits (60), Expect = 3.6 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 339 SELF*CWNRHWCANNDEQSARGI 271 SEL W H CA+ DEQ+++ I Sbjct: 365 SELIEIWKMHGCASKDEQASQDI 387 >At2g31820.1 68415.m03886 ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023 Length = 662 Score = 28.3 bits (60), Expect = 3.6 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +3 Query: 417 DLSFFQSPPQNLKRTIEVIEHEIEKQV 497 DL Q+P + LK+T+ I+HE++ Q+ Sbjct: 423 DLGKPQNPAKQLKQTVSDIKHEVQSQL 449 >At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Length = 762 Score = 28.3 bits (60), Expect = 3.6 Identities = 13/42 (30%), Positives = 17/42 (40%) Frame = +3 Query: 285 TVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQP 410 T + AD NT + PP N A P+P +P P Sbjct: 292 TQAEHTAADADGNTNDVSSPDPPNKNAEADVNPIPPPCHPVP 333 >At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) identical to GI:11993463 Length = 961 Score = 28.3 bits (60), Expect = 3.6 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 164 LNDHDLEGRLYAMLHYADETQTKKNENNQNE 256 + DH +GR A +H ADE+++K ++ + Sbjct: 791 VKDHSSDGRKAARIHSADESESKGTQDEDED 821 >At2g18470.1 68415.m02151 protein kinase family protein contains Pfam PF00069: Protein kinase domain Length = 633 Score = 27.9 bits (59), Expect = 4.8 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Frame = +3 Query: 324 TKIIQKESPPAN-NNTAAKKPVPKAENPQPSVDLSFFQSPPQN 449 T SPP+N N+T + P P +P P S PP + Sbjct: 11 TNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDS 53 >At1g53260.1 68414.m06035 hypothetical protein low similarity to SP|Q38732 DAG protein, chloroplast precursor {Antirrhinum majus} Length = 358 Score = 27.9 bits (59), Expect = 4.8 Identities = 17/67 (25%), Positives = 32/67 (47%) Frame = +3 Query: 252 MSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFF 431 M+ +Y+ PA + + ++ SN + PP N N + + P P P+++ S+ Sbjct: 237 MNQNYQGPPAPNMNQNYQGPPPSNMGQNYQGPPPPNMNQSYQGP------PPPNMNQSYQ 290 Query: 432 QSPPQNL 452 PP N+ Sbjct: 291 GPPPSNM 297 >At3g46810.1 68416.m05081 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 686 Score = 27.5 bits (58), Expect = 6.3 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = -2 Query: 226 LCFVCIMQHSIQPALQIMIVKFLVHVSAAN*SKTKHH 116 LC C+ Q + P + F++H + AN + K H Sbjct: 402 LCEACVSQINTDPFYSCELCGFILHQTCANMPRKKRH 438 >At2g40475.1 68415.m04995 expressed protein Length = 193 Score = 27.5 bits (58), Expect = 6.3 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = -1 Query: 296 TTNSLRGAFSII*AHFGYFRFSWSVFRLHNAA*HTTC-PPNHDR*VPRPCFSCELKQNKT 120 T R +++ H FSWS +++ +++ PP+ PR C+SC K Sbjct: 86 TIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKE 145 Query: 119 SHELNIIAN 93 E I+++ Sbjct: 146 DDEEEIVSS 154 >At1g04160.1 68414.m00406 myosin family protein contains Pfam profiles: PF02736 myosin N-terminal SH3-like domain, PF00063 myosin head (motor domain), PF00612 IQ calmodulin-binding motif, PF01843: DIL domain Length = 1500 Score = 27.5 bits (58), Expect = 6.3 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +3 Query: 297 YWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 440 YW T+ + ++QK PA A K P + + LSF SP Sbjct: 1167 YWLTNTSALLFLLQKSLKPAGAGATASKKPPITTSLFGRMALSFRSSP 1214 >At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965; Length = 185 Score = 27.1 bits (57), Expect = 8.3 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +3 Query: 303 RTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQP 410 RT+A + T I + PP + P P E+P P Sbjct: 132 RTTAAAGTTTIAGQPPPPESPPPESLPPPSPESPSP 167 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,724,213 Number of Sequences: 28952 Number of extensions: 244863 Number of successful extensions: 778 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 732 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 775 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1043173136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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