Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060374.seq
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49530.1 68418.m06130 SIN-like family protein low similarity ...    31   0.68 
At5g03480.1 68418.m00304 expressed protein  ; expression support...    30   0.89 
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    28   3.6  
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ...    28   3.6  
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P...    28   3.6  
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id...    28   3.6  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    28   4.8  
At1g53260.1 68414.m06035 hypothetical protein low similarity to ...    28   4.8  
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    27   6.3  
At2g40475.1 68415.m04995 expressed protein                             27   6.3  
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro...    27   6.3  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   8.3  

>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
           Sex-lethal interactor [Drosophila melanogaster]
           GI:6049274; contains Pfam profile PF04801: Sin-like
           protein conserved region
          Length = 689

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 315 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQ 494
           D   K + K    A       KP PK   P+P+ D    Q PPQ+   ++   EH+++ +
Sbjct: 6   DDKPKEVTKTRRFAPGRAGKSKPKPK---PEPTADKPV-QPPPQSQTESVSKTEHDVDAK 61

Query: 495 VI 500
            +
Sbjct: 62  FV 63


>At5g03480.1 68418.m00304 expressed protein  ; expression supported
           by MPSS
          Length = 321

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 216 TKHRPRKTKITKM--SSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVP 389
           TKH     +IT++    D++K   ++V   W     +  K +Q         T   KP P
Sbjct: 45  TKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPKP 104

Query: 390 KAENPQPSVDLS 425
           K E P P   +S
Sbjct: 105 KHEPPSPITTIS 116


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 339 SELF*CWNRHWCANNDEQSARGI 271
           SEL   W  H CA+ DEQ+++ I
Sbjct: 365 SELIEIWKMHGCASKDEQASQDI 387


>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 662

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 417 DLSFFQSPPQNLKRTIEVIEHEIEKQV 497
           DL   Q+P + LK+T+  I+HE++ Q+
Sbjct: 423 DLGKPQNPAKQLKQTVSDIKHEVQSQL 449


>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 762

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 285 TVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQP 410
           T   +    AD NT  +    PP  N  A   P+P   +P P
Sbjct: 292 TQAEHTAADADGNTNDVSSPDPPNKNAEADVNPIPPPCHPVP 333


>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
           identical to GI:11993463
          Length = 961

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 LNDHDLEGRLYAMLHYADETQTKKNENNQNE 256
           + DH  +GR  A +H ADE+++K  ++   +
Sbjct: 791 VKDHSSDGRKAARIHSADESESKGTQDEDED 821


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 324 TKIIQKESPPAN-NNTAAKKPVPKAENPQPSVDLSFFQSPPQN 449
           T      SPP+N N+T +  P P   +P P    S    PP +
Sbjct: 11  TNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDS 53


>At1g53260.1 68414.m06035 hypothetical protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 358

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 MSSDYRKCPAQTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFF 431
           M+ +Y+  PA  + + ++    SN     +  PP N N + + P      P P+++ S+ 
Sbjct: 237 MNQNYQGPPAPNMNQNYQGPPPSNMGQNYQGPPPPNMNQSYQGP------PPPNMNQSYQ 290

Query: 432 QSPPQNL 452
             PP N+
Sbjct: 291 GPPPSNM 297


>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 226 LCFVCIMQHSIQPALQIMIVKFLVHVSAAN*SKTKHH 116
           LC  C+ Q +  P     +  F++H + AN  + K H
Sbjct: 402 LCEACVSQINTDPFYSCELCGFILHQTCANMPRKKRH 438


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 296 TTNSLRGAFSII*AHFGYFRFSWSVFRLHNAA*HTTC-PPNHDR*VPRPCFSCELKQNKT 120
           T    R   +++  H     FSWS     +++ +++  PP+     PR C+SC     K 
Sbjct: 86  TIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKE 145

Query: 119 SHELNIIAN 93
             E  I+++
Sbjct: 146 DDEEEIVSS 154


>At1g04160.1 68414.m00406 myosin family protein contains Pfam
            profiles: PF02736 myosin N-terminal SH3-like domain,
            PF00063 myosin head (motor domain), PF00612 IQ
            calmodulin-binding motif, PF01843: DIL domain
          Length = 1500

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 297  YWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 440
            YW T+  +   ++QK   PA     A K  P   +    + LSF  SP
Sbjct: 1167 YWLTNTSALLFLLQKSLKPAGAGATASKKPPITTSLFGRMALSFRSSP 1214


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 303 RTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQP 410
           RT+A + T  I  + PP  +      P P  E+P P
Sbjct: 132 RTTAAAGTTTIAGQPPPPESPPPESLPPPSPESPSP 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,213
Number of Sequences: 28952
Number of extensions: 244863
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)