Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060373.seq
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    62   7e-11
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   1.9  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   2.6  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 61.7 bits (143), Expect = 7e-11
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = +2

Query: 308 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 487
           N+ + L W + +L   L + A+YG  +F    + +T +FA I Y  SGLGITAG HRLW+
Sbjct: 57  NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114

Query: 488 HKSYKAK 508
           H++YKAK
Sbjct: 115 HRAYKAK 121


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 311 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 445
           Y KKL W  I+ F Y H   +   Y+ L H     ++F+   Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 262 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 390
           YSRL    H C  SR++  ET+ ++ N        C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 284 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 424
           S+P  Q  ++ K   +VW ++++   F+Y+  AA Y  +  L+   W+  L+
Sbjct: 64  SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 353 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 490
           Y+ +A L   ++ LF     T L   IL +++ LGI A  +  +AH
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAH 559


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 63  RLIIXNTIFTYLASVLLFTNRRIDVIXE*CIFFKRXINSYWY 188
           R  + N  FT   + L F N+ + VI   C+F  +   SY++
Sbjct: 663 RKYLANKYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFF 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,292
Number of Sequences: 5004
Number of extensions: 49678
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)