Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060373.seq
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   6.0  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    27   8.0  
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    27   8.0  

>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 269 DLGLSSTPVQQADNYPKKLVWRNII 343
           D  +   PV + DN+  K++WRNI+
Sbjct: 823 DAMMKRPPVGRGDNFITKVMWRNIV 847


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +2

Query: 290 PVQQADNYPKKLVWRNII---LFTYLHIAAL 373
           PV++ DN+  +++WRNI+   L+  L +A L
Sbjct: 803 PVRRGDNFITRIMWRNILGQGLYQLLVLATL 833


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 279 SPKSGVSAYFQREHHLHPLHWAPYWS 202
           SP S  S+     HHLHP H  P +S
Sbjct: 64  SPSSSASSSSGSLHHLHPTHSLPAFS 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,897
Number of Sequences: 37544
Number of extensions: 282569
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)