Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060373.seq
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               40   0.001
SB_51727| Best HMM Match : RasGEF_N (HMM E-Value=7.8)                  31   0.66 
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)           27   8.2  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +2

Query: 434 LYVMSGLGITAGAHRLWAHKSYKAK 508
           L +  G G+T GAHRLWAH+++KAK
Sbjct: 12  LSLCRGYGVTIGAHRLWAHRTFKAK 36


>SB_51727| Best HMM Match : RasGEF_N (HMM E-Value=7.8)
          Length = 243

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 298 LYRCAGQS*VWSISIFSKRTPFASFTLGAI 209
           +YRC+G + VW I  + K  PF  +  G I
Sbjct: 137 IYRCSGANSVWHIDGYDKLKPFGFYVSGCI 166


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 265  SRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVW---RLPFLISCEMANRPICLYI 435
            S +R +Q +C++S Q   +     Y+  Y  SY  +      L F+I CE   + I L I
Sbjct: 1032 SVIRKLQSSCSSSEQRRSKRQ-RNYSVVYGVSYVLITILEINLNFIICCENETKVISLEI 1090

Query: 436  VC 441
            VC
Sbjct: 1091 VC 1092


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 291  GVLDSPKSGVSAYFQREHHLHPLHWAPYWSVISRYTSSYL 172
            G+ DS  S +S ++   HH H  H    ++ IS YT  Y+
Sbjct: 1241 GLDDSGMSELSLFWCHHHHHHHHHHHQDYADISPYTDPYV 1280


>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
          Length = 432

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 252 FQREHHLHPLHWAPYWSVISRYTSSYLLXV*KKYTIXKLHQF 127
           F +   +HP H+ P W   S   S+ L    ++Y I   HQF
Sbjct: 395 FHQSGKIHPPHFPPVWKDTSPALSTSL----ERYIIRTFHQF 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,323,790
Number of Sequences: 59808
Number of extensions: 349678
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)