Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060373.seq
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260243-1|AAF97549.1|  338|Caenorhabditis elegans stearoyl-CoA ...   100   6e-22
AF022972-8|AAC48239.1|  338|Caenorhabditis elegans Fatty acid de...   100   6e-22
Z95123-2|CAB08356.1|  339|Caenorhabditis elegans Hypothetical pr...    96   1e-20
AF260244-1|AAF97550.1|  339|Caenorhabditis elegans stearoyl-CoA ...    96   1e-20
Z82073-6|CAB04924.1|  333|Caenorhabditis elegans Hypothetical pr...    80   1e-15
AF260242-1|AAF97548.1|  333|Caenorhabditis elegans palmitoyl-CoA...    80   1e-15
AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    31   0.77 
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    29   3.1  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   4.1  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF016420-9|AAB65304.1|  410|Caenorhabditis elegans Serpentine re...    27   7.2  
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF260243-1|AAF97549.1|  338|Caenorhabditis elegans stearoyl-CoA
           desaturase FAT-7 protein.
          Length = 338

 Score =  100 bits (240), Expect = 6e-22
 Identities = 42/65 (64%), Positives = 51/65 (78%)
 Frame = +2

Query: 311 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 490
           Y  ++VWRN+ LF  LH+AA  G Y  +FHAKWQT +F++ LYV SG GITAGAHRLW+H
Sbjct: 42  YKMEIVWRNVALFAALHVAAAIGLYELVFHAKWQTAVFSFALYVFSGFGITAGAHRLWSH 101

Query: 491 KSYKA 505
           KSYKA
Sbjct: 102 KSYKA 106


>AF022972-8|AAC48239.1|  338|Caenorhabditis elegans Fatty acid
           desaturase protein 7 protein.
          Length = 338

 Score =  100 bits (240), Expect = 6e-22
 Identities = 42/65 (64%), Positives = 51/65 (78%)
 Frame = +2

Query: 311 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 490
           Y  ++VWRN+ LF  LH+AA  G Y  +FHAKWQT +F++ LYV SG GITAGAHRLW+H
Sbjct: 42  YKMEIVWRNVALFAALHVAAAIGLYELVFHAKWQTAVFSFALYVFSGFGITAGAHRLWSH 101

Query: 491 KSYKA 505
           KSYKA
Sbjct: 102 KSYKA 106


>Z95123-2|CAB08356.1|  339|Caenorhabditis elegans Hypothetical
           protein VZK822L.1 protein.
          Length = 339

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +2

Query: 311 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 490
           Y  ++VWRN+ LF  LH AA  G Y  +F AKWQT +F ++LYV  G GITAGAHRLW+H
Sbjct: 43  YKMEIVWRNVALFAALHFAAAIGLYQLIFEAKWQTVIFTFLLYVFGGFGITAGAHRLWSH 102

Query: 491 KSYKA 505
           KSYKA
Sbjct: 103 KSYKA 107


>AF260244-1|AAF97550.1|  339|Caenorhabditis elegans stearoyl-CoA
           desaturase FAT-6 protein.
          Length = 339

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +2

Query: 311 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 490
           Y  ++VWRN+ LF  LH AA  G Y  +F AKWQT +F ++LYV  G GITAGAHRLW+H
Sbjct: 43  YKMEIVWRNVALFAALHFAAAIGLYQLIFEAKWQTVIFTFLLYVFGGFGITAGAHRLWSH 102

Query: 491 KSYKA 505
           KSYKA
Sbjct: 103 KSYKA 107


>Z82073-6|CAB04924.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.3 protein.
          Length = 333

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 31/62 (50%), Positives = 45/62 (72%)
 Frame = +2

Query: 320 KLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAHKSY 499
           ++VW+N+ LF  LHI AL G Y  +F AKW T  + ++L+ +  +G+T GAHRLWAH++Y
Sbjct: 37  EIVWKNVALFVALHIGALVGLYQLVFQAKWATVGWVFLLHTLGSMGVTGGAHRLWAHRAY 96

Query: 500 KA 505
           KA
Sbjct: 97  KA 98


>AF260242-1|AAF97548.1|  333|Caenorhabditis elegans palmitoyl-CoA
           fatty acid desaturaseFAT-5 protein.
          Length = 333

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 31/62 (50%), Positives = 45/62 (72%)
 Frame = +2

Query: 320 KLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAHKSY 499
           ++VW+N+ LF  LHI AL G Y  +F AKW T  + ++L+ +  +G+T GAHRLWAH++Y
Sbjct: 37  EIVWKNVALFVALHIGALVGLYQLVFQAKWATVGWVFLLHTLGSMGVTGGAHRLWAHRAY 96

Query: 500 KA 505
           KA
Sbjct: 97  KA 98


>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 566 KQNPEKPKELKMIX---IXRRAPLLCMIYVPIIYVHLL*CQVLTL-HTIYRQI 420
           K+  EK KE+  +    I RR   L   Y+P+ Y H++ C+  TL  T+Y ++
Sbjct: 424 KKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKL 476


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 566 KQNPEKPKELKMIX---IXRRAPLLCMIYVPIIYVHLL*CQVLTL-HTIYRQI 420
           K+  EK KE+  +    I RR   L   Y+P+ Y H++ C+  TL  T+Y ++
Sbjct: 424 KKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKL 476


>Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical
           protein R10E4.9 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +2

Query: 329 WRNIILFTY-LHIAALYG-GYLFLFHAKWQTDLFAY 430
           ++N+ILF Y L +  L+G G+L++FHA++ T  F Y
Sbjct: 4   FKNMILFIYTLVLFILHGYGFLYIFHAEY-TSEFKY 38


>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 347 KVLYSS--KLVSLGSCRLAVQVCWTVLSLEYQHIFKENT 237
           K++YSS   L SLG+  L  +  W V+ L + H+F   T
Sbjct: 4   KMIYSSMFSLRSLGNSFLKTEPRWLVIFLSHSHLFDATT 42


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 254  YADTPDLGLSSTPVQQADNYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLF 424
            YA+TPD  +  T      N    L WR ++  TY H +A++ G  F F  K   DLF
Sbjct: 984  YAETPDDVVVETRAASWFNGMSSL-WRKLLDLTYAH-SAMFTGAQFNFSIK---DLF 1035


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 254  YADTPDLGLSSTPVQQADNYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLF 424
            YA+TPD  +  T      N    L WR ++  TY H +A++ G  F F  K   DLF
Sbjct: 973  YAETPDDVVVETRAASWFNGMSSL-WRKLLDLTYAH-SAMFTGAQFNFSIK---DLF 1024


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical protein
            B0244.6 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 391  EKVASIQRSNMKVCKKYYIPPN*FLW 314
            EKV S  +  +K+CKKYY      LW
Sbjct: 932  EKVLSETKKQLKMCKKYYAKVLETLW 957


>AF016420-9|AAB65304.1|  410|Caenorhabditis elegans Serpentine
           receptor, class r protein6 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -3

Query: 506 LLCMIYVPIIYVHLL*CQVLTLHTIYRQIGLFAISHEIR 390
           ++  +Y+ +++++LL C ++ +  IY  +   ++S EIR
Sbjct: 188 VIAPLYIAMVFINLLSCFIVAICLIYYFLVNLSLSREIR 226


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 338 IILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGL 454
           I++F  ++I+ L+    F+F  ++   L  YI++++ GL
Sbjct: 209 IVVFKVIYIS-LFTTIFFIFLPQYSIQLLIYIIFIVEGL 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,910,009
Number of Sequences: 27780
Number of extensions: 275871
Number of successful extensions: 579
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)