Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060372.seq
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    46   2e-07
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 27/75 (36%), Positives = 40/75 (53%)
 Frame = +1

Query: 355 EVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQT 534
           EV V+G +    I  FE +    ++ + VK  GY +PT IQ   +      + L+   QT
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 535 GSGKTLAYILAAIVH 579
           GSGKT A++L  I+H
Sbjct: 205 GSGKTAAFML-PIIH 218



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 632 VLAPTRELAQQI 667
           +++PTRELA QI
Sbjct: 240 IMSPTRELAIQI 251


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 231 RTCVAQIGFCFTPTFQQKLLXSTSYSSQKIT 323
           R C +++ FC T   Q   + +T ++  K T
Sbjct: 333 RHCESKVNFCATSPCQNGGVCTTIHAGHKCT 363


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 439 HLVAHNQENLLLQSIE*XYXPQRHLQLPRXYFCT 338
           HL+ H Q +L+ QSI     P  H +L R Y  T
Sbjct: 134 HLLGHLQTDLMGQSIFNITSPDDHDRL-RMYINT 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,369
Number of Sequences: 336
Number of extensions: 2988
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)