Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060372.seq
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 9e-17
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 58 7e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 56 4e-08
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 54 1e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 46 3e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 46 3e-05
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 40 0.002
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 38 0.006
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 38 0.006
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 38 0.008
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 38 0.010
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 37 0.017
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 37 0.017
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 35 0.053
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 34 0.12
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 32 0.37
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 31 1.1
SB_29622| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 28 6.1
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 84.2 bits (199), Expect = 9e-17
Identities = 39/117 (33%), Positives = 62/117 (52%)
Frame = +1
Query: 244 PRLGSVSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPD 423
P + +PFNKNF + HP + K+S E ++ R + VSG F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 424 YVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+ ++ + Y +PT IQ Q L + + ++G +TGSGKT A++ A+VHI +QP
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQP 583
Score = 34.7 bits (76), Expect = 0.070
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 491 PIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQI 667
PIA+SGR +G+ K K W P ++P + ++ + APTREL QQI
Sbjct: 549 PIALSGRDIIGIAKTGSGKTAAFLW-PALVHIMDQPELQVGDGPIVLICAPTRELCQQI 606
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/85 (32%), Positives = 46/85 (54%)
Frame = +1
Query: 340 YRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLV 519
+R ++ G I+ ++EA PD + + V +GYK+PTPIQ Q + + ++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 520 GRTQTGSGKTLAYILAAIVHINNQP 594
G +TGSGKT A+ + +V I P
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLP 167
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 55.6 bits (128), Expect = 4e-08
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Frame = +1
Query: 274 FNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMG 453
F ++ D + V + S +E R + + + G + I+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 454 YKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQ-PAYFGDVMVRFAL 630
++ PTPIQ Q L+ + ++G +TGSGKTLAY L + + + P+ GD V L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +1
Query: 316 RSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLAD 495
R +E + YR ++TV+G + FEE+ FPDY+Q K G+ EPT IQAQ +
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQFILP 116
Query: 496 SYV 504
V
Sbjct: 117 GIV 119
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/78 (35%), Positives = 40/78 (51%)
Frame = +1
Query: 355 EVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQT 534
EV VSG I FEEAN + V+ YK+PTP+Q + + ++ QT
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 535 GSGKTLAYILAAIVHINN 588
GSGKT A++L + + N
Sbjct: 758 GSGKTAAFLLPVMTSMMN 775
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +1
Query: 319 SPYEXEEYRNXHEVT--VSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLA 492
+P+ ++ N + VSG I F E F + + + GY+ PTP+Q L
Sbjct: 452 APHTGIKFDNYENIPSKVSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALP 511
Query: 493 DSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQ 591
+ L+ QTGSGKT AY+L + + Q
Sbjct: 512 IVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQ 544
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +1
Query: 298 HPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 477
HPT+ + + ++ R+ E+ V G + + F +F + + + + GY PTPIQ
Sbjct: 164 HPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPTPIQ 223
Query: 478 AQXLADSYVWKXLVGRTQTGSGKTL 552
Q L + ++ TGSGK L
Sbjct: 224 MQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/65 (38%), Positives = 33/65 (50%)
Frame = +1
Query: 355 EVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQT 534
EV VSG I FEEAN + V+ YK+PTP+Q + + ++ QT
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180
Query: 535 GSGKT 549
GSGKT
Sbjct: 181 GSGKT 185
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
I FE+ + + + V GYK+PTP+Q + + L+ QTGSGKT A+++
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 571 I--VHINNQPA 597
+ +++ PA
Sbjct: 934 LSRIYMEGPPA 944
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
QG+K MG+ T IQ + +A + L+G +TGSGKTLA+++ +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 SVSLQPFNKNFXDPHPTVLKRSPYEXEEYR-NXHEVTVSGVEXHNXIQYFEEANFPDYVQ 432
+V QPF K+F P + K +P E +E+R + + V G ++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 433 QGVKTMGYKEPTPIQAQXL 489
+K Y++PTPIQAQ +
Sbjct: 118 DVLKKNSYEKPTPIQAQAI 136
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVW-KXLVGRTQTGSGKTLAYILAAIVHI 582
PD + + + G+ +PTPIQ+ + + ++ + ++G +TGSGKTLA+ + I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 34/52 (65%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
P V++ +K MG +P PIQ + L + K L+ +++TG+GK+L ++L ++
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 340 YRNXHEVTVSGVEXHNXIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQ 483
+R+ + V G + + ++ F E FPDY+ V+ GY PTPIQ Q
Sbjct: 141 FRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQ 192
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
++ F + G+ G+ PT IQ Q + + + ++G +TGSGKTLA+++
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 571 I 573
I
Sbjct: 109 I 109
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQA----QXLADSYVWKXLVGRTQTGSGKTLAYILA 567
FEE +++GV MG+ +P+ IQ LAD V ++ ++Q+G+GKT A++L
Sbjct: 105 FEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPV--NMIAQSQSGTGKTAAFVLT 162
Query: 568 AIVHINNQPAY 600
+ ++ Y
Sbjct: 163 MLSRVDATKPY 173
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+ V +G+ PTPIQA + + + K + TG+GKT A++L + + +P
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYIL 564
FE+ + G+ G+ +P+PIQ + + + + ++ R + G+GKT AY++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLV 103
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYIL 564
FE+ + G+ G+ +P+PIQ + + + + ++ R + G+GKT AY++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLV 103
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 448 MGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
MG K+PT IQ + + +G +TGSGKT A+ L + + + P
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 367 SGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGK 546
S + + F D V + + + +PT IQ + ++ QTGSGK
Sbjct: 369 SDMAFRQRVYSFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGK 428
Query: 547 TLAYILAAIVH 579
TLAY LA +VH
Sbjct: 429 TLAY-LAPLVH 438
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
+G+ G+++P+PIQ + + L+ + ++G+GKT + + A+ ++
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV 75
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = +1
Query: 442 KTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQ 591
+T G+++P+ IQ + + + ++ + Q+G+GKT + ++ + I+ Q
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ 62
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 469 PIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
PIQA Y + ++G+ +TG+GKTL++ L +
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
>SB_29622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 519 WAYSNGFRQNVGLHLGSHCAHKQPTGLFRRRDGPI 623
W Y G NV L G H + PTGL D PI
Sbjct: 14 WIYPLGLHANVDLPTGLHASVDVPTGLHANVDLPI 48
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 448 MGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPAY 600
+G PT +Q + + G GSGK LAY+L I I Y
Sbjct: 205 LGVTVPTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQITESSVY 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,255
Number of Sequences: 59808
Number of extensions: 371015
Number of successful extensions: 806
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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