Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060372.seq
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 75 6e-14
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 71 1e-12
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 61 6e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 60 2e-09
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 60 2e-09
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 60 2e-09
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 60 2e-09
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 50 2e-06
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 50 2e-06
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 44 1e-04
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 44 1e-04
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 44 1e-04
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 42 4e-04
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 42 4e-04
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 42 4e-04
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 42 5e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 41 7e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 41 7e-04
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 41 7e-04
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 40 0.002
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 39 0.003
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 39 0.003
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 39 0.003
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 39 0.003
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 38 0.005
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 38 0.005
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 37 0.015
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 37 0.015
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 37 0.015
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 36 0.027
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 36 0.027
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 35 0.047
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 35 0.047
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 34 0.082
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 33 0.14
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 33 0.14
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 30 1.8
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 28 5.4
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (... 27 9.4
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 74.5 bits (175), Expect = 6e-14
Identities = 35/112 (31%), Positives = 60/112 (53%)
Frame = +1
Query: 259 VSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQG 438
+ Q FNKNF + H + + + +N + V G++ + F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 439 VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
++ Y++PTPIQA + + + ++G +TGSGKT AY+ AIVHI +QP
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQP 331
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +1
Query: 340 YRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLV 519
+R +++ G ++ +EEA FPD V Q VK +GY EPTPIQ Q + + ++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 520 GRTQTGSGKTLAYILAAIVHINNQP 594
G +TGSGKT A++L +V I + P
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITSLP 367
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/110 (30%), Positives = 60/110 (54%)
Frame = +1
Query: 262 SLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGV 441
+L P K+F + V +R YE +++ + ++VT+ G + F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELL 145
Query: 442 KTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQ 591
+++PT IQ+ + + ++ +TGSGKTLA++L A+VHI Q
Sbjct: 146 YGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQ 194
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +2
Query: 488 WPIAMSGRX*LGVLKRVPAKRWPTSWQPLCT*TTNRPISET*WSDLLWVLAPTRELAQQI 667
WPIAMSGR + + K K P T + + + VL PTRELAQQ+
Sbjct: 160 WPIAMSGRDIISIAKTGSGKTL-AFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQV 218
Query: 668 R 670
+
Sbjct: 219 Q 219
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +1
Query: 259 VSLQPFNKNFXDPHPTVLKRSPYEXEEYRNXHE-VTVSGVEXHNXIQYFEEANFPDYVQQ 435
V + F KNF + + + E + YR + +TV G++ I+ + + +
Sbjct: 258 VYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMN 317
Query: 436 GVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQP 594
+K Y +PT IQAQ + + ++G +TGSGKTLA++L HI +QP
Sbjct: 318 VLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP 370
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +1
Query: 334 EEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKX 513
++Y N V VSG I++F EA F V + V GY +PTP+Q + +
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 178
Query: 514 LVGRTQTGSGKTLAYILAAIVHI 582
L+ QTGSGKT A++L I HI
Sbjct: 179 LMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +1
Query: 334 EEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKX 513
++Y N V VSG I++F EA F V + V GY +PTP+Q + +
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 162
Query: 514 LVGRTQTGSGKTLAYILAAIVHI 582
L+ QTGSGKT A++L I HI
Sbjct: 163 LMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +1
Query: 334 EEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKX 513
++Y N V VSG I++F EA F V + V GY +PTP+Q + +
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 159
Query: 514 LVGRTQTGSGKTLAYILAAIVHI 582
L+ QTGSGKT A++L I HI
Sbjct: 160 LMSCAQTGSGKTAAFLLPIIQHI 182
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 367 SGVEXHNXIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSG 543
S V+ + FE+A + G ++ G+++P+PIQ+Q + +G +QTGSG
Sbjct: 74 STVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSG 133
Query: 544 KTLAYILAAIVHINNQPAYF 603
KTLA++L A++HI+ Q A +
Sbjct: 134 KTLAFLLPALLHIDAQLAQY 153
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +1
Query: 358 VTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTG 537
V +G + I F + + +++++ +KT GY PTP+Q + + L+ QTG
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
Query: 538 SGKTLAYILAAI 573
SGKT A+++ +
Sbjct: 214 SGKTAAFLVPLV 225
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F EAN + +Q+ V GY + TPIQ L + ++ QTGSGKT A++L +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 580 I 582
+
Sbjct: 403 L 403
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F EAN + +Q+ V GY + TPIQ L + ++ QTGSGKT A++L +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 580 I 582
+
Sbjct: 403 L 403
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F EAN + +Q+ V GY + TPIQ L + ++ QTGSGKT A++L +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 580 I 582
+
Sbjct: 403 L 403
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F EAN + +++ V GY + TPIQ L + ++ QTGSGKT A++L +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 580 I 582
+
Sbjct: 614 L 614
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F EAN + +++ V GY + TPIQ L + ++ QTGSGKT A++L +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 580 I 582
+
Sbjct: 614 L 614
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F EAN + +++ V GY + TPIQ L + ++ QTGSGKT A++L +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 580 I 582
+
Sbjct: 614 L 614
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
+G+K Y +PT IQ +A S +VG +TGSGKTLA ++ +
Sbjct: 89 EGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYIL 564
F +++ P +++ V+ GY TPIQ L K ++ QTGSGKT A++L
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYIL 564
F +++ P +++ V+ GY TPIQ L K ++ QTGSGKT A++L
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE+ N + + GY +PTPIQ + + K + TG+GKT A++L +
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 580 INNQP 594
+ +P
Sbjct: 210 MIYRP 214
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXL-ADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
P+ V + ++ MG+ EPT IQ+ L A + ++G +TGSGKTLA+ + + +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 218
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +1
Query: 295 PHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGV-KTMGYKEPTP 471
P + ++S + E R ++ G I F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 472 IQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIV 576
IQ Q + + + ++G TGSGKT+ ++L ++
Sbjct: 216 IQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +1
Query: 382 HNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYI 561
H +++ V + ++ G+ +PTPIQ + + K +V ++TGSGKT A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 562 L 564
+
Sbjct: 80 I 80
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +1
Query: 382 HNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYI 561
H +++ V + ++ G+ +PTPIQ + + K +V ++TGSGKT A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 562 L 564
+
Sbjct: 80 I 80
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F + ++ Q ++TM K TP+QA + ++G +TG+GKTLA+ + +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 580 INNQP 594
++ P
Sbjct: 151 LSVDP 155
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F + ++ Q ++TM K TP+QA + ++G +TG+GKTLA+ + +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 580 INNQP 594
++ P
Sbjct: 151 LSVDP 155
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = +1
Query: 307 VLKRSPYEXEEYRNXHEVTVSGVEXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQX 486
V KR ++ R + + G N I F +++ + + ++P+PIQ Q
Sbjct: 97 VEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQS 156
Query: 487 LADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
+ + ++ TGSGKTLA+ L I I
Sbjct: 157 IPFMTERRNVLASAPTGSGKTLAFALPVIDEI 188
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/67 (19%), Positives = 39/67 (58%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
++ F++ + + +G+ G+++P+ IQ + + K ++ + Q+G+GKT + ++
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 571 IVHINNQ 591
+ I+++
Sbjct: 88 LQRIDHE 94
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/67 (19%), Positives = 39/67 (58%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
++ F++ + + +G+ G+++P+ IQ + + K ++ + Q+G+GKT + ++
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 571 IVHINNQ 591
+ I+++
Sbjct: 88 LQRIDHE 94
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/73 (20%), Positives = 41/73 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE + +K + P+P+QA+ + + + ++ + ++G+GKTL + + A+ +
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVEN 83
Query: 580 INNQPAYFGDVMV 618
++++ ++ V+V
Sbjct: 84 LDSRSSHIQKVIV 96
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/73 (20%), Positives = 41/73 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
FE + +K + P+P+QA+ + + + ++ + ++G+GKTL + + A+ +
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVEN 83
Query: 580 INNQPAYFGDVMV 618
++++ ++ V+V
Sbjct: 84 LDSRSSHIQKVIV 96
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
+ V+ +G+ T IQA+ + K ++ +TGSGKTLA++L AI
Sbjct: 81 KAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAI 127
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVH 579
F E + + +G+ +P+ IQ L + K ++G +TGSGKT A+ + +
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 105
Query: 580 INNQPAYF 603
+ + P F
Sbjct: 106 LLDHPQAF 113
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/72 (20%), Positives = 39/72 (54%)
Frame = +1
Query: 376 EXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLA 555
E N I F++ + + +G+ G+++P+ IQ + + + ++ + Q+G+GKT
Sbjct: 20 EEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTAT 79
Query: 556 YILAAIVHINNQ 591
+ ++ + ++ Q
Sbjct: 80 FSISVLQSLDTQ 91
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 436 GVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHINNQPA 597
G+ G+++P+PIQ + + + ++ R + G+GKT AY + I I QPA
Sbjct: 57 GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI--QPA 108
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
P + +K M PTPIQ +V TGSGKTLA+++ ++ +
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
P + +K M PTPIQ +V TGSGKTLA+++ ++ +
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKL 798
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/72 (19%), Positives = 39/72 (54%)
Frame = +1
Query: 376 EXHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLA 555
E + I F++ + + +G+ G+++P+ IQ + + + ++ + Q+G+GKT
Sbjct: 20 EEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTAT 79
Query: 556 YILAAIVHINNQ 591
+ ++ + ++ Q
Sbjct: 80 FSISVLQSLDTQ 91
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVW--KXLVGRTQTGSGKTLAYIL 564
I F E V + + TM ++ PT IQ L + L+ + Q+G+GKT A++L
Sbjct: 208 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 267
Query: 565 AAIVHIN 585
+ I+
Sbjct: 268 TMLCRID 274
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVW--KXLVGRTQTGSGKTLAYIL 564
I F E V + + TM ++ PT IQ L + L+ + Q+G+GKT A++L
Sbjct: 233 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 292
Query: 565 AAIVHIN 585
+ I+
Sbjct: 293 TMLCRID 299
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVW--KXLVGRTQTGSGKTLAYIL 564
I F E V + + TM ++ PT IQ L + L+ + Q+G+GKT A++L
Sbjct: 617 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 676
Query: 565 AAIVHIN 585
+ I+
Sbjct: 677 TMLCRID 683
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/58 (22%), Positives = 33/58 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAAI 573
F + + + + + +G+++ +Q ++ + K ++GR +TGSGKT A+++ +
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQXLADSYVWKXLVGRTQTGSGKTLAYILAA 570
++ F E P+ ++ V YK T +Q +V + TGSGKTLA++L
Sbjct: 10 LKTFREKLGPELLE--VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPM 67
Query: 571 IVHINN---QPAYFGDVMV 618
+ I N QPA G +++
Sbjct: 68 MRMIQNAKLQPADIGALIL 86
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 454 YKEPTPIQAQXL-ADSYVWKXLVGRTQTGSGKTLAYILAAIVHI 582
+ EPT IQ+ L A + ++G +TGSGKTLA+ + + +
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 51
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/86 (27%), Positives = 33/86 (38%)
Frame = -2
Query: 679 ATGPNLLC*LSGRRQDPKQIGPSRLRNRPVGCLCAQWLPRCRPTFCRNPFEYAQLXSSRH 500
A P +C +G + PK+ PSR R+ V C+ + P C N +
Sbjct: 88 AVWPGTICTSAGLCECPKETVPSRTRDGTV-CISSAIPPACPLPEAHNGNPNPATVLANP 146
Query: 499 SYRPAXELE*ASVLCNPLSLHLVAHN 422
S P VLCN LS + N
Sbjct: 147 STHPLNPGNYMPVLCNSLSSEVRTSN 172
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQXLADSY 501
V++G+K+MG E +PI LAD Y
Sbjct: 150 VRKGLKSMGVDENSPIVEMSLADGY 174
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQXLADSY 501
V++G+K+MG E +PI LAD Y
Sbjct: 109 VRKGLKSMGVDENSPIVEMSLADGY 133
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 532 TGSGKTLAYILAAIVHINNQPA 597
TGSGKT+ Y+L + + ++P+
Sbjct: 165 TGSGKTICYVLPVLAAVGSKPS 186
>AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (grd
related) protein13 protein.
Length = 273
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 268 QPFNK-NFXDPHPTVLKRSPYEXEEYRNXHEVTVSGVEXHNXIQ 396
QP++ +F P PT++++ PY Y H + + + HN Q
Sbjct: 63 QPYSPVSFRPPPPTIIQQQPY----YSVPHPIPIQTQQFHNSYQ 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,325
Number of Sequences: 27780
Number of extensions: 267443
Number of successful extensions: 603
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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